Wall clock time and date at job start Sun Mar 29 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 H 1.09000 * 109.46866 * 305.64043 * 3 2 1 5 5 C 1.50699 * 109.47068 * 185.64261 * 3 2 1 6 6 H 1.08004 * 120.00239 * 240.00279 * 5 3 2 7 7 C 1.37882 * 119.99773 * 59.99750 * 5 3 2 8 8 N 1.31508 * 120.00199 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99565 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47011 * 60.00374 * 9 7 5 11 11 H 1.48500 * 109.46602 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47379 * 299.99742 * 9 7 5 13 13 N 1.46900 * 109.47543 * 65.64321 * 3 2 1 14 14 C 1.46893 * 111.00337 * 204.01582 * 13 3 2 15 15 H 1.09000 * 110.32871 * 328.78117 * 14 13 3 16 16 C 1.54485 * 110.37168 * 206.53821 * 14 13 3 17 17 C 1.54576 * 102.14787 * 225.81668 * 16 14 13 18 18 O 1.45833 * 104.55142 * 26.78570 * 17 16 14 19 19 C 1.34217 * 109.82044 * 329.57259 * 18 17 16 20 20 O 1.20827 * 125.03215 * 200.73720 * 19 18 17 21 21 H 1.09000 * 109.47510 * 174.24415 * 1 2 3 22 22 H 1.09001 * 109.47549 * 294.24948 * 1 2 3 23 23 H 1.09008 * 109.46932 * 54.24648 * 1 2 3 24 24 H 1.09000 * 109.47263 * 239.99609 * 2 1 3 25 25 H 1.09001 * 109.46719 * 119.99821 * 2 1 3 26 26 H 0.96998 * 119.99923 * 180.02562 * 8 7 5 27 27 H 1.00903 * 110.99562 * 327.96754 * 13 3 2 28 28 H 1.09006 * 110.87179 * 107.65341 * 16 14 13 29 29 H 1.09003 * 110.86890 * 343.98182 * 16 14 13 30 30 H 1.08998 * 110.43585 * 145.58668 * 17 16 14 31 31 H 1.08998 * 110.44144 * 267.98492 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1397 6 1 4.1541 1.8863 0.6317 7 6 4.1301 0.8828 -1.2523 8 7 3.3831 0.3455 -2.1917 9 14 5.9902 0.8850 -1.4250 10 1 6.5938 0.1459 -0.2873 11 1 6.3695 0.2264 -2.7008 12 1 6.4858 2.2849 -1.4248 13 7 1.6648 2.0946 1.2617 14 6 1.6070 3.5538 1.1032 15 1 2.3294 3.8825 0.3561 16 6 1.8754 4.2526 2.4546 17 6 0.7589 5.3207 2.4960 18 8 -0.3112 4.7642 1.6762 19 6 0.2099 3.9866 0.7144 20 8 -0.3525 3.6797 -0.3100 21 1 -0.3634 -1.0225 -0.1031 22 1 -0.3634 0.4221 0.9370 23 1 -0.3633 0.6005 -0.8341 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 3.7979 -0.0501 -2.9742 27 1 0.7887 1.7336 1.6087 28 1 2.8602 4.7199 2.4614 29 1 1.7720 3.5505 3.2821 30 1 0.4150 5.4724 3.5191 31 1 1.1144 6.2596 2.0716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996947.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:41 Heat of formation + Delta-G solvation = -107.595315 kcal Electronic energy + Delta-G solvation = -14815.346261 eV Core-core repulsion = 12288.815896 eV Total energy + Delta-G solvation = -2526.530365 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.00571 -38.58455 -38.02059 -34.82768 -33.50375 -31.34494 -28.84126 -27.18152 -24.65198 -23.23556 -21.93624 -21.56969 -18.47040 -18.14935 -18.04576 -17.36078 -16.70540 -15.74286 -15.66057 -14.94085 -14.72538 -14.63098 -14.22437 -13.69848 -13.32438 -13.05110 -12.93791 -12.69375 -12.56894 -12.32038 -12.00324 -11.78042 -11.57715 -11.45435 -11.39900 -11.03192 -10.44713 -9.20851 -8.06761 -6.20590 0.92200 1.44441 1.46297 1.53914 2.25520 2.44482 2.97244 3.18837 3.46724 3.59191 4.11890 4.17693 4.38929 4.47076 4.48823 4.65761 4.70388 5.01821 5.05789 5.09365 5.21816 5.26989 5.52985 5.69884 5.73923 5.80889 6.22744 6.31401 6.37909 6.71125 6.92345 7.48226 8.97407 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032633 B = 0.010178 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.811953 B = 2750.349445 C = 3224.554321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.218 3.782 4 H -0.029 1.029 5 C -0.514 4.514 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.645 5.645 14 C 0.031 3.969 15 H 0.101 0.899 16 C -0.131 4.131 17 C 0.051 3.949 18 O -0.364 6.364 19 C 0.450 3.550 20 O -0.503 6.503 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.260 0.740 27 H 0.328 0.672 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 7.722 10.798 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.110 3.890 4 H -0.011 1.011 5 C -0.552 4.552 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.562 5.562 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.277 5.277 14 C -0.082 4.082 15 H 0.119 0.881 16 C -0.169 4.169 17 C -0.022 4.022 18 O -0.280 6.280 19 C 0.290 3.710 20 O -0.388 6.388 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.164 0.836 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.717 7.552 10.439 12.998 hybrid contribution 0.015 -0.192 -1.260 1.275 sum -1.702 7.360 9.179 11.888 Atomic orbital electron populations 1.21742 0.97032 1.00980 0.99866 1.21599 0.93511 0.99071 1.01707 1.19090 0.94705 0.90766 0.84405 1.01141 1.21417 0.92004 1.37235 1.04577 0.91884 1.25794 1.02741 0.95214 0.95484 1.70035 1.36639 1.39654 1.09890 0.85543 0.80080 0.78422 0.77136 1.19400 1.21507 1.19544 1.61057 1.34985 1.00458 1.31199 1.23058 0.92254 0.91941 1.00941 0.88097 1.23028 1.01056 0.97672 0.95167 1.24602 0.84185 0.96554 0.96896 1.86992 1.38669 1.60203 1.42179 1.24883 0.89766 0.75459 0.80856 1.90677 1.69061 1.55650 1.23421 0.91998 0.93024 0.95576 0.91173 0.93573 0.93089 0.85349 0.86395 0.87759 0.83630 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 9.64 71.98 0.69 -5.10 16 2 C -0.12 -5.88 5.37 30.59 0.16 -5.71 16 3 C 0.22 11.16 1.89 44.17 0.08 11.24 16 4 H -0.03 -1.74 7.52 -2.39 -0.02 -1.75 16 5 C -0.51 -28.00 8.49 25.60 0.22 -27.78 16 6 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 7 C 0.01 0.33 5.29 84.66 0.45 0.78 16 8 N -0.92 -54.10 11.29 21.45 0.24 -53.86 16 9 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.64 -26.45 6.06 -473.54 -2.87 -29.32 16 14 C 0.03 1.09 3.07 44.88 0.14 1.22 16 15 H 0.10 4.04 7.64 -2.39 -0.02 4.03 16 16 C -0.13 -2.89 6.95 31.64 0.22 -2.67 16 17 C 0.05 0.89 7.90 72.52 0.57 1.47 16 18 O -0.36 -10.95 11.07 -51.62 -0.57 -11.52 16 19 C 0.45 17.16 7.89 71.44 0.56 17.72 16 20 O -0.50 -24.00 17.64 21.63 0.38 -23.62 16 21 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 22 H 0.05 1.92 6.65 -2.39 -0.02 1.90 16 23 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.07 3.89 5.94 -2.39 -0.01 3.88 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.33 12.67 6.29 -89.69 -0.56 12.11 16 28 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.10 2.16 8.02 -2.39 -0.02 2.14 16 30 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -68.94 260.44 2.87 -66.07 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.56 Total: 15.61 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 3.10 Total: -8.84 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.63 Total: -83.18 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.19 Total: -35.14 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.94 2.87 -66.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996947.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.521 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds