Wall clock time and date at job start Sun Mar 29 2020 22:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46715 * 2 1 4 4 H 1.08996 * 109.47371 * 54.47460 * 3 2 1 5 5 C 1.50702 * 109.46853 * 174.47100 * 3 2 1 6 6 H 1.08001 * 119.99439 * 120.00017 * 5 3 2 7 7 C 1.37869 * 120.00352 * 300.00046 * 5 3 2 8 8 N 1.31524 * 119.99865 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00289 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46639 * 89.99941 * 9 7 5 11 11 H 1.48494 * 109.47585 * 209.99935 * 9 7 5 12 12 H 1.48501 * 109.47231 * 330.00236 * 9 7 5 13 13 N 1.46897 * 109.46901 * 294.47215 * 3 2 1 14 14 C 1.46903 * 110.99785 * 145.84036 * 13 3 2 15 15 H 1.09000 * 110.32910 * 328.39248 * 14 13 3 16 16 C 1.54493 * 110.36740 * 206.15481 * 14 13 3 17 17 C 1.54571 * 102.14676 * 225.70639 * 16 14 13 18 18 O 1.45831 * 104.55322 * 26.78589 * 17 16 14 19 19 C 1.34220 * 109.81702 * 329.57589 * 18 17 16 20 20 O 1.20829 * 125.02857 * 200.74138 * 19 18 17 21 21 H 1.09002 * 109.47072 * 175.98937 * 1 2 3 22 22 H 1.09006 * 109.47484 * 295.98553 * 1 2 3 23 23 H 1.08997 * 109.47414 * 55.99097 * 1 2 3 24 24 H 1.08996 * 109.47069 * 240.00006 * 2 1 3 25 25 H 1.08992 * 109.46998 * 119.99714 * 2 1 3 26 26 H 0.97000 * 119.99981 * 179.97438 * 8 7 5 27 27 H 1.00894 * 111.00251 * 21.88757 * 13 3 2 28 28 H 1.09007 * 110.86710 * 107.54061 * 16 14 13 29 29 H 1.08996 * 110.86871 * 343.86976 * 16 14 13 30 30 H 1.08997 * 110.43921 * 145.58910 * 17 16 14 31 31 H 1.09003 * 110.43839 * 267.98697 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5980 1.9842 0.8363 5 6 3.5407 1.4448 0.1369 6 1 4.1526 1.8871 -0.6354 7 6 4.1325 0.8824 1.2479 8 7 3.3872 0.3434 2.1880 9 14 5.9928 0.8845 1.4172 10 1 6.4244 2.1197 2.1197 11 1 6.4202 -0.3041 2.1980 12 1 6.6127 0.8399 0.0685 13 7 1.6622 2.0954 -1.2606 14 6 1.3703 3.5195 -1.0490 15 1 0.9544 3.6771 -0.0539 16 6 0.3918 4.0340 -2.1283 17 6 1.0470 5.3684 -2.5517 18 8 2.4666 5.1841 -2.2735 19 6 2.6220 4.3494 -1.2341 20 8 3.6135 4.2737 -0.5476 21 1 -0.3633 -1.0252 -0.0719 22 1 -0.3634 0.4503 0.9238 23 1 -0.3634 0.5748 -0.8518 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8036 -0.0527 2.9695 27 1 0.8794 1.6259 -1.6905 28 1 -0.5982 4.2045 -1.7053 29 1 0.3421 3.3419 -2.9689 30 1 0.8878 5.5502 -3.6146 31 1 0.6473 6.1929 -1.9612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846996950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:43 Heat of formation + Delta-G solvation = -79.038987 kcal Electronic energy + Delta-G solvation = -14875.025512 eV Core-core repulsion = 12349.733442 eV Total energy + Delta-G solvation = -2525.292070 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37895 -36.70918 -36.31507 -33.12409 -31.54764 -29.86934 -27.03092 -25.47533 -22.74162 -22.27968 -20.21190 -19.56807 -16.99171 -16.40853 -15.95783 -15.75647 -14.80014 -14.16088 -13.92481 -13.47710 -13.03999 -12.91255 -12.65346 -12.05155 -11.87869 -11.68552 -11.19824 -11.04740 -10.71294 -10.54215 -10.24773 -9.95387 -9.74299 -9.65331 -9.53190 -8.94967 -8.22327 -7.45376 -5.85522 -3.85214 2.81732 3.45577 3.50683 3.57554 3.66134 4.51227 4.58569 4.60212 4.75927 5.03409 5.39977 5.47960 5.50531 5.60732 5.79448 6.00153 6.07067 6.10892 6.33952 6.75139 6.97363 7.05783 7.25141 7.32928 7.74727 8.00828 8.15990 8.28349 8.38929 8.67515 9.22143 9.78275 11.20993 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.012145 C = 0.008937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.950545 B = 2304.889663 C = 3132.287224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.217 3.783 4 H 0.009 0.991 5 C -0.472 4.472 6 H 0.065 0.935 7 C 0.052 3.948 8 N -0.905 5.905 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.037 3.963 15 H 0.080 0.920 16 C -0.164 4.164 17 C 0.059 3.941 18 O -0.359 6.359 19 C 0.485 3.515 20 O -0.417 6.417 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.104 0.896 26 H 0.257 0.743 27 H 0.330 0.670 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 5.832 -7.408 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.110 3.890 4 H 0.027 0.973 5 C -0.511 4.511 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.546 5.546 9 Si 0.725 3.275 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.301 5.301 14 C -0.076 4.076 15 H 0.098 0.902 16 C -0.202 4.202 17 C -0.016 4.016 18 O -0.277 6.277 19 C 0.322 3.678 20 O -0.294 6.294 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.122 0.878 26 H 0.067 0.933 27 H 0.150 0.850 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.887 5.914 -7.195 12.205 hybrid contribution -0.063 -0.145 0.658 0.677 sum -7.950 5.769 -6.537 11.799 Atomic orbital electron populations 1.21894 0.99576 0.99615 0.99682 1.21874 0.91186 1.00415 1.03505 1.19372 0.96299 0.89909 0.83384 0.97314 1.21173 0.90687 1.34752 1.04474 0.91724 1.24891 0.98098 0.95833 0.95845 1.69862 1.34573 1.40424 1.09755 0.86508 0.86001 0.77005 0.77963 1.20861 1.21692 1.20020 1.60635 1.41062 0.98001 1.30425 1.22701 0.92577 0.93407 0.98876 0.90250 1.23229 0.99311 0.97562 1.00081 1.23869 0.77677 0.97527 1.02561 1.87059 1.27575 1.64089 1.48974 1.23146 0.89374 0.78249 0.77077 1.90772 1.32745 1.64445 1.41451 0.94256 0.93766 0.94822 0.93953 0.87777 0.93315 0.84981 0.89175 0.88806 0.87895 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.81 37.16 0.36 -2.38 16 2 C -0.13 -3.02 5.29 -26.73 -0.14 -3.16 16 3 C 0.22 5.39 2.05 -68.86 -0.14 5.25 16 4 H 0.01 0.25 7.26 -51.93 -0.38 -0.13 16 5 C -0.47 -13.60 7.54 -34.44 -0.26 -13.86 16 6 H 0.06 1.98 7.04 -52.49 -0.37 1.61 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -26.47 11.29 55.43 0.63 -25.85 16 9 Si 0.90 23.25 29.54 -169.99 -5.02 18.23 16 10 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.67 -13.69 6.15 -101.02 -0.62 -14.31 16 14 C 0.04 0.66 3.31 -67.77 -0.22 0.44 16 15 H 0.08 1.46 7.34 -51.93 -0.38 1.08 16 16 C -0.16 -1.92 6.73 -25.12 -0.17 -2.09 16 17 C 0.06 0.66 7.90 37.98 0.30 0.96 16 18 O -0.36 -6.27 11.07 -38.88 -0.43 -6.70 16 19 C 0.49 10.16 8.10 36.31 0.29 10.45 16 20 O -0.42 -10.76 15.98 -18.41 -0.29 -11.06 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.53 6.45 -51.93 -0.34 0.19 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.10 2.74 5.94 -51.93 -0.31 2.43 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.33 5.82 5.96 -39.29 -0.23 5.59 16 28 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.09 1.03 7.81 -51.93 -0.41 0.63 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 256.32 15.07 3.86 3.86 Total: -1.00 -32.88 256.32 -6.03 -38.91 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.08 Total: -0.12 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.07 Total: -2.97 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.00 Total: -40.16 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.72 Total: -17.75 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.88 -6.03 -38.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.127 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds