Wall clock time and date at job start Sun Mar 29 2020 22:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46715 * 2 1 4 4 H 1.08996 * 109.47371 * 54.47460 * 3 2 1 5 5 C 1.50702 * 109.46853 * 174.47100 * 3 2 1 6 6 H 1.08001 * 119.99439 * 120.00017 * 5 3 2 7 7 C 1.37869 * 120.00352 * 300.00046 * 5 3 2 8 8 N 1.31524 * 119.99865 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00289 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46639 * 89.99941 * 9 7 5 11 11 H 1.48494 * 109.47585 * 209.99935 * 9 7 5 12 12 H 1.48501 * 109.47231 * 330.00236 * 9 7 5 13 13 N 1.46897 * 109.46901 * 294.47215 * 3 2 1 14 14 C 1.46903 * 110.99785 * 145.84036 * 13 3 2 15 15 H 1.09000 * 110.32910 * 328.39248 * 14 13 3 16 16 C 1.54493 * 110.36740 * 206.15481 * 14 13 3 17 17 C 1.54571 * 102.14676 * 225.70639 * 16 14 13 18 18 O 1.45831 * 104.55322 * 26.78589 * 17 16 14 19 19 C 1.34220 * 109.81702 * 329.57589 * 18 17 16 20 20 O 1.20829 * 125.02857 * 200.74138 * 19 18 17 21 21 H 1.09002 * 109.47072 * 175.98937 * 1 2 3 22 22 H 1.09006 * 109.47484 * 295.98553 * 1 2 3 23 23 H 1.08997 * 109.47414 * 55.99097 * 1 2 3 24 24 H 1.08996 * 109.47069 * 240.00006 * 2 1 3 25 25 H 1.08992 * 109.46998 * 119.99714 * 2 1 3 26 26 H 0.97000 * 119.99981 * 179.97438 * 8 7 5 27 27 H 1.00894 * 111.00251 * 21.88757 * 13 3 2 28 28 H 1.09007 * 110.86710 * 107.54061 * 16 14 13 29 29 H 1.08996 * 110.86871 * 343.86976 * 16 14 13 30 30 H 1.08997 * 110.43921 * 145.58910 * 17 16 14 31 31 H 1.09003 * 110.43839 * 267.98697 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5980 1.9842 0.8363 5 6 3.5407 1.4448 0.1369 6 1 4.1526 1.8871 -0.6354 7 6 4.1325 0.8824 1.2479 8 7 3.3872 0.3434 2.1880 9 14 5.9928 0.8845 1.4172 10 1 6.4244 2.1197 2.1197 11 1 6.4202 -0.3041 2.1980 12 1 6.6127 0.8399 0.0685 13 7 1.6622 2.0954 -1.2606 14 6 1.3703 3.5195 -1.0490 15 1 0.9544 3.6771 -0.0539 16 6 0.3918 4.0340 -2.1283 17 6 1.0470 5.3684 -2.5517 18 8 2.4666 5.1841 -2.2735 19 6 2.6220 4.3494 -1.2341 20 8 3.6135 4.2737 -0.5476 21 1 -0.3633 -1.0252 -0.0719 22 1 -0.3634 0.4503 0.9238 23 1 -0.3634 0.5748 -0.8518 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8036 -0.0527 2.9695 27 1 0.8794 1.6259 -1.6905 28 1 -0.5982 4.2045 -1.7053 29 1 0.3421 3.3419 -2.9689 30 1 0.8878 5.5502 -3.6146 31 1 0.6473 6.1929 -1.9612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:43 Heat of formation + Delta-G solvation = -103.162742 kcal Electronic energy + Delta-G solvation = -14876.071596 eV Core-core repulsion = 12349.733442 eV Total energy + Delta-G solvation = -2526.338154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.78443 -38.32521 -38.07710 -34.84952 -33.40508 -31.22302 -28.73902 -27.18118 -24.60634 -23.41056 -21.71500 -21.37104 -18.66364 -17.86995 -17.70936 -17.27676 -16.76985 -15.75917 -15.64196 -14.78320 -14.68810 -14.54649 -14.21341 -13.66232 -13.26485 -13.07629 -12.99468 -12.74225 -12.55848 -12.34319 -11.97414 -11.56804 -11.43727 -11.37020 -11.27480 -10.86455 -10.39817 -9.19032 -8.05688 -6.11020 1.23685 1.34339 1.37805 1.47486 2.37121 2.46205 3.18975 3.27321 3.45995 3.54762 4.05999 4.20836 4.41976 4.53130 4.58391 4.69414 4.73130 4.89466 4.98766 5.06335 5.21976 5.35120 5.56433 5.77709 5.85925 5.95732 6.29158 6.45213 6.70697 6.90510 6.98209 7.54575 8.97868 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.012145 C = 0.008937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.950545 B = 2304.889663 C = 3132.287224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.225 3.775 4 H -0.021 1.021 5 C -0.484 4.484 6 H 0.037 0.963 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.942 3.058 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.031 3.969 15 H 0.072 0.928 16 C -0.144 4.144 17 C 0.051 3.949 18 O -0.373 6.373 19 C 0.480 3.520 20 O -0.486 6.486 21 H 0.059 0.941 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.258 0.742 27 H 0.350 0.650 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 6.249 -9.046 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.117 3.883 4 H -0.004 1.004 5 C -0.523 4.523 6 H 0.056 0.944 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.770 3.230 10 H -0.215 1.215 11 H -0.200 1.200 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.081 4.081 15 H 0.090 0.910 16 C -0.182 4.182 17 C -0.022 4.022 18 O -0.291 6.291 19 C 0.320 3.680 20 O -0.369 6.369 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.172 0.828 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.130 6.336 -8.876 14.884 hybrid contribution 0.572 -0.176 1.073 1.229 sum -9.558 6.161 -7.803 13.791 Atomic orbital electron populations 1.21751 0.95506 1.01558 1.00729 1.21666 0.94801 0.98443 1.01558 1.19067 0.93864 0.91082 0.84268 1.00365 1.21374 0.93006 1.34134 1.03814 0.94422 1.25489 1.01358 0.96051 0.95955 1.69959 1.35512 1.40870 1.09925 0.85799 0.82406 0.77108 0.77709 1.21495 1.20034 1.20312 1.60312 1.42599 0.99564 1.28305 1.22792 0.92803 0.91431 1.01122 0.91000 1.23273 0.99222 0.97431 0.98232 1.24461 0.74067 0.98116 1.05572 1.87014 1.31909 1.63015 1.47124 1.23758 0.89255 0.78348 0.76668 1.90719 1.35405 1.66484 1.44269 0.92160 0.94349 0.91802 0.94232 0.91354 0.93275 0.82784 0.85249 0.87379 0.84075 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.81 71.98 0.71 -4.00 16 2 C -0.13 -5.77 5.29 30.60 0.16 -5.60 16 3 C 0.23 11.33 2.05 44.17 0.09 11.42 16 4 H -0.02 -1.18 7.26 -2.39 -0.02 -1.20 16 5 C -0.48 -28.83 7.54 25.60 0.19 -28.64 16 6 H 0.04 2.40 7.04 -2.91 -0.02 2.38 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -55.16 11.29 21.45 0.24 -54.92 16 9 Si 0.94 48.90 29.54 68.60 2.03 50.93 16 10 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 13 N -0.67 -26.95 6.15 -473.51 -2.91 -29.86 16 14 C 0.03 1.06 3.31 44.87 0.15 1.21 16 15 H 0.07 2.61 7.34 -2.39 -0.02 2.59 16 16 C -0.14 -2.72 6.73 31.64 0.21 -2.50 16 17 C 0.05 0.92 7.90 72.52 0.57 1.49 16 18 O -0.37 -12.49 11.07 -51.65 -0.57 -13.06 16 19 C 0.48 20.27 8.10 71.43 0.58 20.85 16 20 O -0.49 -26.32 15.98 21.63 0.35 -25.98 16 21 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 23 H 0.06 1.78 6.45 -2.39 -0.02 1.76 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 3.65 5.94 -2.39 -0.01 3.63 16 26 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.35 11.35 5.96 -89.70 -0.53 10.81 16 28 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.11 1.80 7.81 -2.39 -0.02 1.78 16 30 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -76.39 256.32 2.84 -73.55 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 0.60 Total: 4.17 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 3.11 Total: -4.83 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.67 Total: -84.78 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.23 Total: -39.03 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -76.39 2.84 -73.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.612 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds