Wall clock time and date at job start Sun Mar 29 2020 22:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47158 * 305.82411 * 3 2 1 5 5 C 1.50700 * 109.47154 * 185.82622 * 3 2 1 6 6 H 1.08005 * 119.99972 * 245.41635 * 5 3 2 7 7 C 1.37872 * 120.00418 * 65.42353 * 5 3 2 8 8 N 1.31515 * 120.00528 * 195.48029 * 7 5 3 9 9 Si 1.86802 * 119.99770 * 15.48539 * 7 5 3 10 10 H 1.48497 * 109.47353 * 86.33505 * 9 7 5 11 11 H 1.48501 * 109.47054 * 206.33755 * 9 7 5 12 12 H 1.48498 * 109.47267 * 326.33246 * 9 7 5 13 13 N 1.46898 * 109.47329 * 65.82408 * 3 2 1 14 14 C 1.46904 * 111.00027 * 262.29341 * 13 3 2 15 15 H 1.09002 * 110.45252 * 22.31445 * 14 13 3 16 16 C 1.54467 * 110.40617 * 144.71483 * 14 13 3 17 17 C 1.54372 * 103.19922 * 118.32490 * 16 14 13 18 18 O 1.46266 * 104.91544 * 342.37636 * 17 16 14 19 19 C 1.34571 * 108.50342 * 32.23815 * 18 17 16 20 20 O 1.20820 * 125.94308 * 146.78380 * 19 18 17 21 21 H 1.09001 * 109.47048 * 177.87093 * 1 2 3 22 22 H 1.09006 * 109.46531 * 297.86277 * 1 2 3 23 23 H 1.08992 * 109.47676 * 57.86243 * 1 2 3 24 24 H 1.09003 * 109.46770 * 240.00024 * 2 1 3 25 25 H 1.08997 * 109.47683 * 119.99829 * 2 1 3 26 26 H 0.97001 * 120.00429 * 179.97438 * 8 7 5 27 27 H 1.00895 * 111.00197 * 138.34023 * 13 3 2 28 28 H 1.09001 * 110.70203 * 236.80155 * 16 14 13 29 29 H 1.08996 * 110.70238 * 359.85276 * 16 14 13 30 30 H 1.09001 * 110.31926 * 101.17002 * 17 16 14 31 31 H 1.09005 * 110.32154 * 223.36849 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5940 1.9855 -0.8332 5 6 3.5401 1.4449 -0.1442 6 1 4.1597 1.8059 0.6634 7 6 4.1216 0.9865 -1.3072 8 7 5.4050 0.7000 -1.3322 9 14 3.0867 0.7723 -2.8475 10 1 3.0266 2.0590 -3.5863 11 1 3.6976 -0.2678 -3.7137 12 1 1.7132 0.3553 -2.4670 13 7 1.6685 2.0932 1.2635 14 6 0.4479 2.8949 1.1038 15 1 -0.1290 2.5440 0.2480 16 6 -0.4064 2.8372 2.3894 17 6 -0.4515 4.3102 2.8491 18 8 0.6475 4.9608 2.1361 19 6 0.7960 4.3604 0.9409 20 8 1.1463 4.8967 -0.0835 21 1 -0.3633 -1.0270 -0.0382 22 1 -0.3632 0.4803 0.9086 23 1 -0.3634 0.5466 -0.8701 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.8140 0.3771 -2.1504 27 1 2.4273 2.6565 1.6169 28 1 -1.4094 2.4713 2.1695 29 1 0.0733 2.2129 3.1431 30 1 -1.4031 4.7641 2.5725 31 1 -0.2989 4.3754 3.9264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846996951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:45 Heat of formation + Delta-G solvation = -103.639977 kcal Electronic energy + Delta-G solvation = -14871.937511 eV Core-core repulsion = 12345.578662 eV Total energy + Delta-G solvation = -2526.358849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.00553 -38.59561 -38.17145 -34.79560 -33.56694 -31.72521 -29.34247 -27.08806 -24.31606 -23.15344 -22.09328 -21.61450 -19.24722 -18.11701 -17.96835 -17.29766 -16.89215 -15.91715 -15.63551 -14.90830 -14.67415 -14.52225 -14.25354 -13.93766 -13.72543 -13.24091 -13.10310 -12.76007 -12.49921 -12.38613 -12.06049 -11.70260 -11.57102 -11.37364 -11.19499 -11.14582 -10.64343 -9.37466 -8.38411 -6.38375 0.78993 1.28709 1.34195 1.41537 2.29055 2.31756 2.95001 2.97002 3.33209 3.61842 4.06254 4.16045 4.32659 4.46730 4.52938 4.60255 4.72013 4.85499 4.99759 5.17609 5.21376 5.27734 5.38877 5.49346 5.66687 5.77846 5.87864 6.19773 6.32450 6.45822 6.69641 7.26330 8.78078 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035829 B = 0.010575 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.310293 B = 2647.117463 C = 2925.131956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.191 3.809 4 H -0.001 1.001 5 C -0.542 4.542 6 H 0.037 0.963 7 C 0.024 3.976 8 N -0.936 5.936 9 Si 0.922 3.078 10 H -0.286 1.286 11 H -0.281 1.281 12 H -0.220 1.220 13 N -0.636 5.636 14 C 0.023 3.977 15 H 0.113 0.887 16 C -0.135 4.135 17 C 0.049 3.951 18 O -0.375 6.375 19 C 0.453 3.547 20 O -0.500 6.500 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.267 0.733 27 H 0.335 0.665 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 1.665 7.679 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C 0.081 3.919 4 H 0.017 0.983 5 C -0.580 4.580 6 H 0.055 0.945 7 C -0.175 4.175 8 N -0.575 5.575 9 Si 0.745 3.255 10 H -0.212 1.212 11 H -0.207 1.207 12 H -0.142 1.142 13 N -0.267 5.267 14 C -0.089 4.089 15 H 0.131 0.869 16 C -0.172 4.172 17 C -0.023 4.023 18 O -0.292 6.292 19 C 0.293 3.707 20 O -0.384 6.384 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.967 1.479 7.434 18.583 hybrid contribution 1.043 0.782 -1.524 2.006 sum -15.924 2.262 5.910 17.135 Atomic orbital electron populations 1.21841 0.94805 1.01782 1.01752 1.21748 0.96068 0.96613 1.00292 1.19521 0.92832 0.92816 0.86687 0.98304 1.21473 0.91749 1.43231 1.01590 0.94505 1.25712 0.95915 0.93844 1.02011 1.70097 1.13598 1.44937 1.28843 0.86267 0.82061 0.77790 0.79336 1.21248 1.20702 1.14210 1.61054 1.05773 1.30965 1.28948 1.23409 0.95564 0.87231 1.02661 0.86882 1.23055 1.01790 0.96910 0.95491 1.24585 0.87359 0.91443 0.98944 1.87272 1.52500 1.60654 1.28795 1.24911 0.72866 0.91237 0.81683 1.90665 1.43629 1.74586 1.29473 0.92041 0.90573 0.94034 0.94292 0.92642 0.92414 0.84684 0.85623 0.87350 0.87421 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.72 71.98 0.63 -3.69 16 2 C -0.11 -4.39 4.92 30.59 0.15 -4.24 16 3 C 0.19 8.73 1.69 44.17 0.07 8.81 16 4 H 0.00 -0.03 6.14 -2.39 -0.01 -0.05 16 5 C -0.54 -31.17 8.99 25.60 0.23 -30.94 16 6 H 0.04 2.34 7.73 -2.91 -0.02 2.32 16 7 C 0.02 1.44 5.33 84.65 0.45 1.89 16 8 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 9 Si 0.92 44.59 25.84 68.60 1.77 46.37 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.22 -9.43 5.53 99.48 0.55 -8.88 16 13 N -0.64 -24.14 5.95 -473.25 -2.81 -26.96 16 14 C 0.02 0.70 2.18 44.93 0.10 0.80 16 15 H 0.11 3.34 6.24 -2.39 -0.01 3.33 16 16 C -0.13 -2.34 6.64 31.56 0.21 -2.13 16 17 C 0.05 0.79 7.87 72.45 0.57 1.36 16 18 O -0.37 -11.14 11.17 -55.16 -0.62 -11.75 16 19 C 0.45 16.32 7.75 71.49 0.55 16.88 16 20 O -0.50 -22.90 18.00 21.57 0.39 -22.51 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.08 1.94 6.47 -2.38 -0.02 1.93 16 23 H 0.04 1.22 8.03 -2.39 -0.02 1.20 16 24 H 0.04 1.68 4.99 -2.39 -0.01 1.67 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 27 H 0.33 14.06 7.56 -89.70 -0.68 13.38 16 28 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.88 7.97 -2.39 -0.02 1.86 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.14 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -73.72 252.87 2.30 -71.43 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.30 Total: 13.41 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 2.97 Total: -11.27 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.51 Total: -85.67 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.23 Total: -34.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.77 Total: 46.37 kcal Total: -73.72 2.30 -71.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846996951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.212 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds