Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48504 * 109.46985 * 239.99951 * 3 2 1 5 5 H 1.48494 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47076 * 120.00021 * 3 2 1 7 7 C 1.38751 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00200 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99969 * 179.97438 * 9 7 2 11 11 O 1.21209 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99970 * 180.02562 * 10 9 7 13 13 C 1.50706 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.33635 * 122.75319 * 124.73143 * 13 12 10 15 15 S 1.76192 * 107.92524 * 179.97438 * 14 13 12 16 16 C 1.70976 * 90.28427 * 0.27803 * 15 14 13 17 17 N 1.29027 * 110.16712 * 359.83656 * 16 15 14 18 18 H 0.96999 * 119.99713 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47434 * 59.99921 * 12 10 9 20 20 H 1.08998 * 109.47220 * 299.99947 * 12 10 9 21 21 H 1.08001 * 126.03202 * 0.03585 * 14 13 12 22 22 H 1.08001 * 124.91761 * 179.84059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1023 1.6963 -1.2125 5 1 1.2836 2.7464 -0.0006 6 1 3.1023 1.6963 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0016 10 6 2.0650 -3.4966 0.0015 11 8 3.2754 -3.4332 0.0010 12 6 1.3808 -4.8392 0.0021 13 6 2.4187 -5.9320 0.0025 14 6 2.4523 -6.8968 0.9265 15 16 3.8111 -7.9554 0.5560 16 6 4.2039 -6.9908 -0.7999 17 7 3.3713 -6.0106 -0.9047 18 1 -0.4850 0.8401 -0.0004 19 1 0.7576 -4.9299 -0.8876 20 1 0.7584 -4.9295 0.8923 21 1 1.7669 -7.0084 1.7537 22 1 5.0293 -7.1752 -1.4715 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853943164.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -57.663087 kcal Electronic energy + Delta-G solvation = -11547.760557 eV Core-core repulsion = 9194.482097 eV Total energy + Delta-G solvation = -2353.278459 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.32734 -40.30906 -37.15901 -34.29907 -33.20309 -29.61881 -27.33550 -25.79814 -22.55342 -20.44635 -19.84364 -19.04198 -18.33345 -16.98602 -16.58200 -16.32599 -16.16184 -15.25077 -14.62779 -14.13110 -13.99022 -13.66706 -13.58867 -12.95017 -12.43096 -12.26997 -12.15422 -12.00154 -11.03079 -10.68727 -10.51275 -10.35350 -9.74343 -8.52819 -6.32548 -0.18325 0.54154 0.77526 1.33175 1.33649 1.49183 1.68593 1.77935 2.17665 2.92751 2.98298 3.30512 3.98085 4.22524 4.44290 4.50233 4.68717 4.81308 5.10821 5.22796 5.84919 6.71038 6.89117 6.92513 7.79770 8.67861 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.081924 B = 0.006607 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.697457 B = 4236.978105 C = 4432.037516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.005 4.005 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.262 1.262 7 C -0.420 4.420 8 H 0.077 0.923 9 O -0.247 6.247 10 C 0.400 3.600 11 O -0.570 6.570 12 C -0.024 4.024 13 C 0.052 3.948 14 C -0.248 4.248 15 S 0.176 5.824 16 C 0.008 3.992 17 N -0.498 5.498 18 H 0.279 0.721 19 H 0.121 0.879 20 H 0.141 0.859 21 H 0.208 0.792 22 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -14.416 1.934 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.205 4.205 3 Si 0.836 3.164 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 O -0.156 6.156 10 C 0.246 3.754 11 O -0.467 6.467 12 C -0.064 4.064 13 C -0.080 4.080 14 C -0.387 4.387 15 S 0.428 5.572 16 C -0.290 4.290 17 N -0.211 5.211 18 H 0.088 0.912 19 H 0.139 0.861 20 H 0.159 0.841 21 H 0.225 0.775 22 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.538 -14.791 1.916 15.589 hybrid contribution -0.199 1.511 -0.199 1.537 sum 4.339 -13.280 1.717 14.076 Atomic orbital electron populations 1.70066 1.07526 1.29372 1.47137 1.26518 0.96942 1.02246 0.94801 0.84696 0.77604 0.74454 0.79630 1.18917 1.18092 1.18666 1.21311 0.91970 0.81346 1.55003 0.90576 1.83893 1.40209 1.14118 1.77411 1.24170 0.86821 0.88017 0.76351 1.90534 1.17186 1.88468 1.50482 1.19749 0.95448 0.83575 1.07623 1.19756 0.96927 0.97741 0.93553 1.27197 1.05670 1.00168 1.05696 1.83451 1.21865 1.28114 1.23739 1.28878 1.03324 0.94169 1.02633 1.66006 1.04865 1.21636 1.28635 0.91200 0.86124 0.84113 0.77519 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.49 13.67 21.62 0.30 -54.19 14 2 C -0.01 -0.30 5.49 84.87 0.47 0.16 14 3 Si 1.02 44.80 29.55 68.60 2.03 46.82 14 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 14 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 14 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 14 7 C -0.42 -26.51 9.65 67.94 0.66 -25.86 14 8 H 0.08 4.91 6.86 -2.91 -0.02 4.89 14 9 O -0.25 -15.08 9.75 14.79 0.14 -14.93 14 10 C 0.40 21.10 7.87 71.23 0.56 21.66 14 11 O -0.57 -33.36 14.68 20.78 0.30 -33.06 14 12 C -0.02 -0.90 6.31 29.10 0.18 -0.72 14 13 C 0.05 1.79 5.64 41.52 0.23 2.02 14 14 C -0.25 -6.28 11.07 66.77 0.74 -5.55 14 15 S 0.18 3.56 23.22 -56.49 -1.31 2.25 14 16 C 0.01 0.21 12.23 130.65 1.60 1.81 14 17 N -0.50 -18.46 9.68 -191.54 -1.85 -20.31 14 18 H 0.28 15.22 8.31 -92.71 -0.77 14.45 14 19 H 0.12 4.14 8.14 -2.39 -0.02 4.12 14 20 H 0.14 4.21 8.03 -2.39 -0.02 4.19 14 21 H 0.21 3.75 8.06 -2.91 -0.02 3.73 14 22 H 0.22 4.21 8.06 -2.91 -0.02 4.18 14 Total: -1.00 -80.23 227.56 5.29 -74.94 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.24 Total: 4.94 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.44 Total: -6.47 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.56 Total: -74.50 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: 0.45 Total: -47.99 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.31 Total: 2.25 kcal Total: -80.23 5.29 -74.94 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853943164.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.277 kcal (2) G-P(sol) polarization free energy of solvation -80.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds