Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28601 * 124.61656 * 2 1 4 4 C 1.31384 * 108.71746 * 179.97438 * 3 2 1 5 5 C 1.39668 * 105.89833 * 0.26236 * 4 3 2 6 6 C 1.50700 * 127.04935 * 179.73924 * 5 4 3 7 7 S 1.81398 * 109.47126 * 89.99821 * 6 5 4 8 8 C 1.81406 * 103.00197 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47299 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99991 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00174 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99532 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00253 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46849 * 90.00257 * 13 11 9 15 15 H 1.48499 * 109.47312 * 210.00478 * 13 11 9 16 16 H 1.48500 * 109.46910 * 330.00389 * 13 11 9 17 17 N 1.28599 * 124.62168 * 179.97438 * 2 1 3 18 18 H 1.09003 * 109.46968 * 90.02700 * 1 2 3 19 19 H 1.08997 * 109.47187 * 210.02998 * 1 2 3 20 20 H 1.09011 * 109.47129 * 330.02897 * 1 2 3 21 21 H 1.08002 * 127.04759 * 179.97438 * 4 3 2 22 22 H 1.09007 * 109.47265 * 209.99493 * 6 5 4 23 23 H 1.08998 * 109.47535 * 329.99845 * 6 5 4 24 24 H 1.08997 * 109.47158 * 299.99935 * 8 7 6 25 25 H 1.09000 * 109.47080 * 59.99577 * 8 7 6 26 26 H 0.97003 * 119.99622 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6982 -0.0052 6 6 4.6619 -1.6062 -0.0125 7 16 5.1495 -1.9776 1.6948 8 6 6.5870 -3.0633 1.4816 9 6 7.1175 -3.4657 2.8335 10 1 6.6376 -3.1047 3.7312 11 6 8.2148 -4.2955 2.9245 12 7 8.7989 -4.7355 1.8313 13 14 8.8720 -4.7948 4.6003 14 1 8.2017 -6.0440 5.0426 15 1 10.3363 -5.0241 4.5095 16 1 8.6002 -3.7132 5.5808 17 7 2.1956 -1.0583 0.0005 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3634 0.8903 0.5134 21 1 4.3210 1.3492 0.0003 22 1 4.4141 -2.5334 -0.5294 23 1 5.4866 -1.1128 -0.5267 24 1 6.2907 -3.9539 0.9275 25 1 7.3637 -2.5338 0.9298 26 1 9.5711 -5.3190 1.8953 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863346604.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = 99.376036 kcal Electronic energy + Delta-G solvation = -11315.360408 eV Core-core repulsion = 9137.017521 eV Total energy + Delta-G solvation = -2178.342886 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.40692 -34.23497 -33.12377 -32.51458 -29.77022 -28.49617 -26.24248 -23.09022 -22.20958 -20.87278 -17.23351 -16.80883 -16.44921 -15.29366 -14.70283 -14.48950 -14.01027 -13.41166 -13.23663 -12.91449 -12.53187 -12.31934 -12.03898 -11.20325 -10.86217 -10.75942 -10.67046 -10.32833 -9.96233 -9.59100 -8.97421 -8.71884 -8.59391 -6.65878 -6.17534 -4.21372 1.80158 2.21377 2.39967 3.16448 3.28102 3.33679 3.39687 3.86603 4.16363 4.37662 4.85303 4.87196 5.03123 5.12558 5.19756 5.35742 5.62729 5.90523 6.20436 6.31239 6.77809 7.12130 7.13757 7.77281 8.03424 8.43637 8.80406 9.41446 10.93798 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082006 B = 0.005513 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.355887 B = 5077.991752 C = 5168.941623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.165 5.165 3 N -0.297 5.297 4 C -0.011 4.011 5 C 0.033 3.967 6 C -0.007 4.007 7 S -0.288 6.288 8 C 0.089 3.911 9 C -0.511 4.511 10 H 0.067 0.933 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.906 3.094 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.271 1.271 17 N -0.278 5.278 18 H 0.086 0.914 19 H 0.101 0.899 20 H 0.100 0.900 21 H 0.199 0.801 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.158 8.299 -5.029 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.065 5.065 3 N -0.138 5.138 4 C -0.195 4.195 5 C -0.130 4.130 6 C -0.156 4.156 7 S -0.062 6.062 8 C -0.058 4.058 9 C -0.550 4.550 10 H 0.085 0.915 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.733 3.267 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.196 1.196 17 N -0.122 5.122 18 H 0.104 0.896 19 H 0.120 0.880 20 H 0.118 0.882 21 H 0.215 0.785 22 H 0.108 0.892 23 H 0.114 0.886 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.911 8.554 -4.180 16.857 hybrid contribution 1.874 -0.749 -0.323 2.044 sum -12.036 7.805 -4.503 15.035 Atomic orbital electron populations 1.22046 0.70586 1.05695 1.04557 1.47843 1.08695 0.99491 1.50515 1.73993 1.03923 1.16133 1.19733 1.24618 0.94342 0.94658 1.05834 1.22452 0.91755 0.93714 1.05103 1.21359 0.94060 0.99920 1.00286 1.86878 1.44280 1.67411 1.07665 1.21093 0.89356 0.94103 1.01268 1.20671 1.13253 1.29979 0.91143 0.91485 1.24958 0.96041 0.95460 0.97397 1.69957 1.21830 1.33779 1.27573 0.86352 0.77915 0.79069 0.83327 1.20371 1.20982 1.19557 1.74043 1.03589 1.15204 1.19350 0.89570 0.88023 0.88167 0.78458 0.89172 0.88585 0.94473 0.94385 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.91 11.57 59.85 0.69 1.60 15 2 N -0.16 -2.34 4.35 -16.64 -0.07 -2.41 15 3 N -0.30 -4.44 12.05 30.67 0.37 -4.07 15 4 C -0.01 -0.16 12.16 -17.21 -0.21 -0.37 15 5 C 0.03 0.55 6.61 -82.25 -0.54 0.01 15 6 C -0.01 -0.12 6.53 36.01 0.24 0.12 15 7 S -0.29 -6.41 21.64 -107.50 -2.33 -8.74 15 8 C 0.09 2.30 5.70 36.00 0.21 2.51 15 9 C -0.51 -14.49 9.13 -34.44 -0.31 -14.80 15 10 H 0.07 1.91 7.71 -52.49 -0.40 1.51 15 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 12 N -0.89 -25.97 13.29 55.43 0.74 -25.23 15 13 Si 0.91 21.47 29.54 -169.99 -5.02 16.44 15 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 17 N -0.28 -4.68 12.05 33.71 0.41 -4.27 15 18 H 0.09 0.53 8.14 -51.93 -0.42 0.11 15 19 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.10 0.62 8.14 -51.92 -0.42 0.20 15 21 H 0.20 2.35 8.06 -52.49 -0.42 1.92 15 22 H 0.09 1.56 8.14 -51.92 -0.42 1.14 15 23 H 0.10 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.04 1.01 8.14 -51.92 -0.42 0.58 15 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 252.46 15.07 3.80 3.80 Total: -1.00 -32.54 252.46 -5.06 -37.60 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -2.92 Total: -3.92 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -0.03 Total: -9.20 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 1.44 Total: -35.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -2.33 Total: -8.74 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.54 -5.06 -37.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863346604.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.974 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds