Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28601 * 124.61656 * 2 1 4 4 C 1.31384 * 108.71746 * 179.97438 * 3 2 1 5 5 C 1.39668 * 105.89833 * 0.26236 * 4 3 2 6 6 C 1.50700 * 127.04935 * 179.73924 * 5 4 3 7 7 S 1.81398 * 109.47126 * 89.99821 * 6 5 4 8 8 C 1.81406 * 103.00197 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47299 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99991 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00174 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99532 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00253 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46849 * 90.00257 * 13 11 9 15 15 H 1.48499 * 109.47312 * 210.00478 * 13 11 9 16 16 H 1.48500 * 109.46910 * 330.00389 * 13 11 9 17 17 N 1.28599 * 124.62168 * 179.97438 * 2 1 3 18 18 H 1.09003 * 109.46968 * 90.02700 * 1 2 3 19 19 H 1.08997 * 109.47187 * 210.02998 * 1 2 3 20 20 H 1.09011 * 109.47129 * 330.02897 * 1 2 3 21 21 H 1.08002 * 127.04759 * 179.97438 * 4 3 2 22 22 H 1.09007 * 109.47265 * 209.99493 * 6 5 4 23 23 H 1.08998 * 109.47535 * 329.99845 * 6 5 4 24 24 H 1.08997 * 109.47158 * 299.99935 * 8 7 6 25 25 H 1.09000 * 109.47080 * 59.99577 * 8 7 6 26 26 H 0.97003 * 119.99622 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6982 -0.0052 6 6 4.6619 -1.6062 -0.0125 7 16 5.1495 -1.9776 1.6948 8 6 6.5870 -3.0633 1.4816 9 6 7.1175 -3.4657 2.8335 10 1 6.6376 -3.1047 3.7312 11 6 8.2148 -4.2955 2.9245 12 7 8.7989 -4.7355 1.8313 13 14 8.8720 -4.7948 4.6003 14 1 8.2017 -6.0440 5.0426 15 1 10.3363 -5.0241 4.5095 16 1 8.6002 -3.7132 5.5808 17 7 2.1956 -1.0583 0.0005 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3634 0.8903 0.5134 21 1 4.3210 1.3492 0.0003 22 1 4.4141 -2.5334 -0.5294 23 1 5.4866 -1.1128 -0.5267 24 1 6.2907 -3.9539 0.9275 25 1 7.3637 -2.5338 0.9298 26 1 9.5711 -5.3190 1.8953 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863346604.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = 77.504787 kcal Electronic energy + Delta-G solvation = -11316.308816 eV Core-core repulsion = 9137.017521 eV Total energy + Delta-G solvation = -2179.291295 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.56073 -35.33991 -35.25239 -33.67438 -30.96846 -30.57388 -27.30855 -25.16936 -23.35900 -22.08752 -18.69106 -18.21002 -17.90302 -17.11390 -16.30939 -15.76461 -15.33915 -14.90495 -14.64761 -14.32079 -13.91794 -13.77858 -13.56227 -12.74309 -12.64417 -12.39773 -12.18010 -11.87406 -11.61200 -11.25622 -10.74282 -10.72335 -10.02949 -8.46187 -8.31175 -6.43826 0.44143 0.95262 1.41680 1.42877 1.48436 1.54651 1.75737 2.05734 2.38925 3.03571 3.04812 3.68998 4.09548 4.23789 4.31877 4.43486 4.56792 4.59048 4.98844 4.99421 5.00306 5.14287 5.59387 5.74287 5.91575 6.63101 7.23800 7.26764 8.80712 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082006 B = 0.005513 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.355887 B = 5077.991752 C = 5168.941623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.156 5.156 3 N -0.302 5.302 4 C -0.012 4.012 5 C 0.008 3.992 6 C 0.010 3.990 7 S -0.302 6.302 8 C 0.093 3.907 9 C -0.537 4.537 10 H 0.060 0.940 11 C 0.016 3.984 12 N -0.924 5.924 13 Si 0.975 3.025 14 H -0.270 1.270 15 H -0.274 1.274 16 H -0.266 1.266 17 N -0.297 5.297 18 H 0.110 0.890 19 H 0.112 0.888 20 H 0.122 0.878 21 H 0.223 0.777 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.016 0.984 25 H 0.024 0.976 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 9.041 -4.713 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.059 5.059 3 N -0.144 5.144 4 C -0.195 4.195 5 C -0.154 4.154 6 C -0.139 4.139 7 S -0.076 6.076 8 C -0.054 4.054 9 C -0.575 4.575 10 H 0.078 0.922 11 C -0.185 4.185 12 N -0.563 5.563 13 Si 0.798 3.202 14 H -0.196 1.196 15 H -0.199 1.199 16 H -0.191 1.191 17 N -0.142 5.142 18 H 0.128 0.872 19 H 0.131 0.869 20 H 0.140 0.860 21 H 0.240 0.760 22 H 0.108 0.892 23 H 0.135 0.865 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.743 9.300 -3.867 17.855 hybrid contribution 1.955 -0.911 -0.511 2.217 sum -12.788 8.389 -4.378 15.908 Atomic orbital electron populations 1.22602 0.67595 1.07397 1.06731 1.48462 1.10287 0.98651 1.48481 1.74005 1.04024 1.16372 1.19988 1.25038 0.95239 0.94185 1.05001 1.22325 0.91497 0.94375 1.07228 1.21311 0.95413 1.00584 0.96605 1.86722 1.42292 1.66246 1.12380 1.20778 0.90717 0.93989 0.99959 1.20980 1.14012 1.30733 0.91804 0.92184 1.25876 0.96086 0.95119 1.01410 1.70053 1.22276 1.34177 1.29763 0.85296 0.77591 0.78826 0.78454 1.19555 1.19917 1.19064 1.73984 1.04000 1.16585 1.19674 0.87153 0.86902 0.85985 0.76026 0.89182 0.86456 0.96541 0.95802 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 11.57 127.77 1.48 2.77 15 2 N -0.16 -4.11 4.35 -206.55 -0.90 -5.01 15 3 N -0.30 -8.40 12.05 -56.87 -0.69 -9.08 15 4 C -0.01 -0.34 12.16 85.11 1.03 0.69 15 5 C 0.01 0.24 6.61 42.97 0.28 0.53 15 6 C 0.01 0.36 6.53 71.24 0.47 0.82 15 7 S -0.30 -13.50 21.64 -56.49 -1.22 -14.73 15 8 C 0.09 4.95 5.70 71.23 0.41 5.36 15 9 C -0.54 -30.88 9.13 25.60 0.23 -30.65 15 10 H 0.06 3.46 7.71 -2.91 -0.02 3.44 15 11 C 0.02 0.90 5.46 84.65 0.46 1.36 15 12 N -0.92 -54.19 13.29 21.45 0.28 -53.91 15 13 Si 0.97 43.85 29.54 68.60 2.03 45.87 15 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 17 N -0.30 -9.57 12.05 -47.25 -0.57 -10.14 15 18 H 0.11 1.02 8.14 -2.39 -0.02 1.00 15 19 H 0.11 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.12 1.15 8.14 -2.38 -0.02 1.13 15 21 H 0.22 4.77 8.06 -2.91 -0.02 4.75 15 22 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 23 H 0.12 3.52 8.14 -2.39 -0.02 3.50 15 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 25 H 0.02 1.30 8.14 -2.39 -0.02 1.28 15 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -69.34 252.46 4.47 -64.88 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.17 Total: 1.22 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 4.36 Total: -19.11 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.87 Total: -78.14 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -13.50 SS G_CDS: -1.22 Total: -14.73 kcal Total: -69.34 4.47 -64.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863346604.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.381 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds