Wall clock time and date at job start Sun Mar 29 2020 21:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 S 1.81403 * 109.46815 * 90.02831 * 7 6 5 9 9 C 1.81402 * 103.00089 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47287 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00292 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00111 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99937 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47308 * 90.00145 * 14 12 10 16 16 H 1.48502 * 109.47120 * 209.99979 * 14 12 10 17 17 H 1.48502 * 109.47206 * 330.00420 * 14 12 10 18 18 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 19 19 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 20 20 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 21 21 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 22 22 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 23 23 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 24 24 H 1.08997 * 109.47047 * 300.00352 * 9 8 7 25 25 H 1.08999 * 109.46942 * 59.99576 * 9 8 7 26 26 H 0.97004 * 119.99832 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 16 1.8281 -3.1587 1.7041 9 6 1.3546 -4.8972 1.4938 10 6 1.1854 -5.5389 2.8466 11 1 1.3461 -4.9590 3.7434 12 6 0.8243 -6.8664 2.9397 13 7 0.6280 -7.5725 1.8478 14 14 0.6152 -7.6621 4.6168 15 1 -0.7910 -7.5050 5.0674 16 1 0.9469 -9.1066 4.5241 17 1 1.5235 -7.0071 5.5921 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3634 0.8902 -0.5134 20 1 -0.3634 -0.8898 -0.5141 21 1 2.0576 2.1094 0.0004 22 1 1.0275 -2.6837 -0.5163 23 1 2.7453 -3.1500 -0.5220 24 1 0.4150 -4.9539 0.9442 25 1 2.1325 -5.4209 0.9382 26 1 0.3743 -8.5064 1.9132 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871675054.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:27 Heat of formation + Delta-G solvation = 24.198508 kcal Electronic energy + Delta-G solvation = -11460.900674 eV Core-core repulsion = 9247.005094 eV Total energy + Delta-G solvation = -2213.895580 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.98481 -36.38825 -35.32510 -33.50766 -30.77129 -30.00320 -28.85036 -25.27010 -22.70353 -22.30687 -18.86855 -18.66585 -18.33857 -17.16226 -16.39241 -16.00000 -15.20301 -14.76122 -14.55693 -14.29395 -14.03885 -13.93652 -13.70638 -13.08423 -12.75097 -12.66504 -12.31037 -12.07599 -11.67521 -11.01141 -10.76884 -10.61097 -10.26512 -8.58622 -8.35951 -6.49607 0.30069 0.78375 1.39001 1.40706 1.51398 1.60619 1.91353 2.35390 2.45309 2.98781 3.05672 3.47992 3.94425 4.10291 4.29708 4.42762 4.69470 4.84444 4.89229 4.89785 4.90667 5.00671 5.36915 5.53974 5.84333 6.57165 7.18576 7.32817 8.76141 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.065537 B = 0.006079 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.136919 B = 4604.764927 C = 4667.470673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.201 4.201 3 C -0.047 4.047 4 O 0.105 5.895 5 N -0.389 5.389 6 C 0.013 3.987 7 C -0.005 4.005 8 S -0.293 6.293 9 C 0.093 3.907 10 C -0.539 4.539 11 H 0.061 0.939 12 C 0.016 3.984 13 N -0.924 5.924 14 Si 0.978 3.022 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.267 1.267 18 H 0.074 0.926 19 H 0.104 0.896 20 H 0.063 0.937 21 H 0.271 0.729 22 H 0.111 0.889 23 H 0.083 0.917 24 H 0.023 0.977 25 H 0.014 0.986 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 16.194 -4.577 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.207 4.207 3 C -0.128 4.128 4 O 0.036 5.964 5 N -0.092 5.092 6 C -0.145 4.145 7 C -0.153 4.153 8 S -0.067 6.067 9 C -0.054 4.054 10 C -0.577 4.577 11 H 0.079 0.921 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.801 3.199 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.192 1.192 18 H 0.092 0.908 19 H 0.123 0.877 20 H 0.082 0.918 21 H 0.286 0.714 22 H 0.129 0.871 23 H 0.102 0.898 24 H 0.041 0.959 25 H 0.032 0.968 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.177 16.000 -3.741 16.432 hybrid contribution -0.948 -1.414 -0.545 1.788 sum -0.771 14.585 -4.286 15.222 Atomic orbital electron populations 1.20181 0.85547 1.04175 1.03304 1.21673 1.00117 0.90714 1.08166 1.26658 0.81289 1.02653 1.02161 1.84762 1.30701 1.14451 1.66485 1.73853 1.22875 0.92502 1.20001 1.22817 0.89749 0.96917 1.04994 1.21367 1.05112 0.91512 0.97324 1.86674 1.92073 1.16667 1.11275 1.20795 0.97478 0.86897 1.00233 1.20951 1.49008 0.96199 0.91566 0.92072 1.25910 0.93903 0.97018 1.01646 1.70050 1.46796 1.09440 1.29952 0.85251 0.79086 0.77435 0.78126 1.19095 1.19960 1.19179 0.90758 0.87729 0.91809 0.71391 0.87093 0.89811 0.95878 0.96782 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.37 71.24 0.74 -0.68 15 2 C -0.20 -4.92 6.32 -19.74 -0.12 -5.05 15 3 C -0.05 -0.87 12.26 67.17 0.82 -0.04 15 4 O 0.11 2.78 11.20 71.60 0.80 3.58 15 5 N -0.39 -13.24 12.07 -49.55 -0.60 -13.84 15 6 C 0.01 0.43 6.59 43.58 0.29 0.71 15 7 C 0.00 -0.18 6.45 71.24 0.46 0.28 15 8 S -0.29 -13.45 21.64 -56.49 -1.22 -14.67 15 9 C 0.09 5.07 5.70 71.23 0.41 5.48 15 10 C -0.54 -31.26 9.13 25.60 0.23 -31.03 15 11 H 0.06 3.55 7.71 -2.91 -0.02 3.53 15 12 C 0.02 0.92 5.46 84.66 0.46 1.38 15 13 N -0.92 -54.48 13.29 21.45 0.28 -54.20 15 14 Si 0.98 43.92 29.54 68.60 2.03 45.95 15 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 18 H 0.07 1.47 8.14 -2.39 -0.02 1.46 15 19 H 0.10 1.20 8.14 -2.39 -0.02 1.18 15 20 H 0.06 1.31 7.65 -2.39 -0.02 1.30 15 21 H 0.27 1.55 8.06 -2.91 -0.02 1.53 15 22 H 0.11 3.66 7.65 -2.39 -0.02 3.64 15 23 H 0.08 3.15 8.14 -2.39 -0.02 3.13 15 24 H 0.02 1.28 8.14 -2.39 -0.02 1.26 15 25 H 0.01 0.80 8.14 -2.39 -0.02 0.78 15 26 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 Total: -1.00 -68.89 251.42 5.75 -63.14 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: 1.17 Total: -1.01 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.29 Total: -28.95 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.31 Total: -68.04 kcal Atomic # 8 Polarization: 2.78 SS G_CDS: 0.80 Total: 3.58 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -13.45 SS G_CDS: -1.22 Total: -14.67 kcal Total: -68.89 5.75 -63.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871675054.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.334 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds