Wall clock time and date at job start Sun Mar 29 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.50699 * 109.46956 * 239.99705 * 2 1 3 5 5 H 1.08006 * 120.00391 * 274.99940 * 4 2 1 6 6 C 1.37880 * 119.99801 * 95.00569 * 4 2 1 7 7 N 1.31511 * 119.99841 * 184.91336 * 6 4 2 8 8 Si 1.86798 * 119.99968 * 4.91089 * 6 4 2 9 9 H 1.48503 * 109.47218 * 84.83122 * 8 6 4 10 10 H 1.48504 * 109.46950 * 204.82888 * 8 6 4 11 11 H 1.48504 * 109.47143 * 324.83158 * 8 6 4 12 12 N 1.46908 * 109.47137 * 119.99898 * 2 1 3 13 13 C 1.46892 * 111.00083 * 275.00188 * 12 2 1 14 14 C 1.50699 * 109.47458 * 179.97438 * 13 12 2 15 15 C 1.38128 * 123.88397 * 94.71868 * 14 13 12 16 16 N 1.30427 * 112.22397 * 179.85287 * 15 14 13 17 17 S 1.56000 * 108.39913 * 0.40294 * 16 15 14 18 18 N 1.30420 * 123.88465 * 275.02560 * 14 13 12 19 19 H 1.09001 * 109.46956 * 295.05621 * 1 2 3 20 20 H 1.08996 * 109.46842 * 55.05218 * 1 2 3 21 21 H 1.09001 * 109.46898 * 175.05434 * 1 2 3 22 22 H 0.97004 * 120.00206 * 180.02562 * 7 6 4 23 23 H 1.00902 * 110.99927 * 151.04044 * 12 2 1 24 24 H 1.09002 * 109.46848 * 299.99836 * 13 12 2 25 25 H 1.09000 * 109.47322 * 59.99316 * 13 12 2 26 26 H 1.07994 * 123.88733 * 0.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3948 -1.7820 10 1 2.1060 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.9119 -0.5477 3.9468 16 7 4.0942 -1.2576 5.0257 17 16 2.7157 -1.8332 5.4751 18 7 1.8247 -1.2203 4.3507 19 1 -0.3633 0.4352 0.9310 20 1 -0.3633 0.5887 -0.8423 21 1 -0.3633 -1.0239 -0.0886 22 1 2.9371 -0.1050 -4.2554 23 1 2.9173 -1.1206 1.0288 24 1 2.7589 1.0461 2.1182 25 1 1.0871 0.6163 2.5525 26 1 4.7049 -0.0366 3.4212 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878819939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:54 Heat of formation + Delta-G solvation = 55.518401 kcal Electronic energy + Delta-G solvation = -11852.865432 eV Core-core repulsion = 9672.620736 eV Total energy + Delta-G solvation = -2180.244696 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.66255 -36.13972 -33.42154 -32.34859 -30.13120 -26.86260 -25.30555 -23.79649 -20.58929 -19.76664 -19.17828 -17.13094 -15.79430 -15.57130 -15.09555 -13.92690 -13.84072 -13.66398 -12.61907 -12.45411 -12.14335 -11.63328 -11.09987 -11.05978 -10.86961 -10.72609 -10.68422 -10.57598 -10.35594 -9.83086 -9.10619 -8.84453 -8.65021 -7.54489 -6.16441 -4.17913 0.83822 1.69315 1.92117 2.26516 3.20565 3.30696 3.31601 4.32811 4.59909 5.01165 5.17840 5.34973 5.38434 5.58122 5.89817 6.05008 6.36505 6.63260 6.77525 6.82975 6.85120 7.36254 7.56775 7.83764 8.27876 8.57397 8.92924 9.46616 10.96450 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.056400 B = 0.007027 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.331664 B = 3983.467402 C = 4048.538945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.182 3.818 3 H 0.007 0.993 4 C -0.520 4.520 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.676 5.676 13 C 0.137 3.863 14 C 0.077 3.923 15 C 0.037 3.963 16 N -0.575 5.575 17 S 0.640 5.360 18 N -0.549 5.549 19 H 0.022 0.978 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.265 0.735 23 H 0.342 0.658 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 2.173 14.725 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 H 0.025 0.975 4 C -0.558 4.558 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.310 5.310 13 C 0.003 3.997 14 C -0.099 4.099 15 C -0.158 4.158 16 N -0.416 5.416 17 S 0.683 5.317 18 N -0.392 5.392 19 H 0.041 0.959 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.161 0.839 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.245 0.687 16.383 16.399 hybrid contribution 1.288 2.562 -1.844 3.409 sum 1.043 3.248 14.539 14.934 Atomic orbital electron populations 1.21847 0.97847 1.00887 0.97846 1.19595 0.92634 0.92494 0.87860 0.97543 1.21047 1.43887 0.95934 0.94965 0.90209 1.25034 0.94290 0.98272 0.95287 1.69897 1.45681 1.35904 1.01672 0.86888 0.79010 0.86422 0.77400 1.20230 1.21361 1.18887 1.60718 1.33266 1.32353 1.04646 1.20475 1.00829 0.92336 0.86074 1.22710 0.89617 0.98773 0.98759 1.23807 0.97847 1.00450 0.93724 1.72376 1.32914 1.17878 1.18451 1.78960 0.84940 1.40932 1.26827 1.72301 1.38785 1.16797 1.11277 0.95939 0.93931 0.92912 0.92475 0.83937 0.93465 0.89552 0.78136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.42 37.16 0.35 -2.37 15 2 C 0.18 4.14 2.26 -68.86 -0.16 3.98 15 3 H 0.01 0.16 4.95 -51.93 -0.26 -0.10 15 4 C -0.52 -14.06 8.84 -34.44 -0.30 -14.37 15 5 H 0.08 2.39 8.06 -52.48 -0.42 1.97 15 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 7 N -0.89 -26.53 13.96 55.43 0.77 -25.76 15 8 Si 0.88 20.64 26.99 -169.99 -4.59 16.05 15 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 11 H -0.26 -5.97 6.82 56.52 0.39 -5.59 15 12 N -0.68 -13.53 6.29 -109.22 -0.69 -14.21 15 13 C 0.14 2.24 5.98 -4.98 -0.03 2.21 15 14 C 0.08 1.17 6.38 -83.23 -0.53 0.64 15 15 C 0.04 0.50 11.43 -18.19 -0.21 0.30 15 16 N -0.57 -7.95 11.45 18.96 0.22 -7.73 15 17 S 0.64 7.95 23.71 -107.50 -2.55 5.40 15 18 N -0.55 -8.58 11.45 22.71 0.26 -8.32 15 19 H 0.02 0.42 7.35 -51.93 -0.38 0.04 15 20 H 0.04 0.92 8.14 -51.93 -0.42 0.49 15 21 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.05 15 23 H 0.34 6.85 8.34 -39.29 -0.33 6.52 15 24 H 0.05 0.70 8.04 -51.93 -0.42 0.28 15 25 H 0.09 1.43 7.36 -51.93 -0.38 1.05 15 26 H 0.20 2.15 8.06 -52.49 -0.42 1.72 15 LS Contribution 241.43 15.07 3.64 3.64 Total: -1.00 -30.24 241.43 -6.52 -36.76 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.61 Total: 1.82 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.98 Total: -7.64 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.56 Total: -56.03 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.59 Total: 16.05 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -2.55 Total: 5.40 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.24 -6.52 -36.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.278 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds