Wall clock time and date at job start Sun Mar 29 2020 21:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.50699 * 109.46956 * 239.99705 * 2 1 3 5 5 H 1.08006 * 120.00391 * 274.99940 * 4 2 1 6 6 C 1.37880 * 119.99801 * 95.00569 * 4 2 1 7 7 N 1.31511 * 119.99841 * 184.91336 * 6 4 2 8 8 Si 1.86798 * 119.99968 * 4.91089 * 6 4 2 9 9 H 1.48503 * 109.47218 * 84.83122 * 8 6 4 10 10 H 1.48504 * 109.46950 * 204.82888 * 8 6 4 11 11 H 1.48504 * 109.47143 * 324.83158 * 8 6 4 12 12 N 1.46908 * 109.47137 * 119.99898 * 2 1 3 13 13 C 1.46892 * 111.00083 * 275.00188 * 12 2 1 14 14 C 1.50699 * 109.47458 * 179.97438 * 13 12 2 15 15 C 1.38128 * 123.88397 * 94.71868 * 14 13 12 16 16 N 1.30427 * 112.22397 * 179.85287 * 15 14 13 17 17 S 1.56000 * 108.39913 * 0.40294 * 16 15 14 18 18 N 1.30420 * 123.88465 * 275.02560 * 14 13 12 19 19 H 1.09001 * 109.46956 * 295.05621 * 1 2 3 20 20 H 1.08996 * 109.46842 * 55.05218 * 1 2 3 21 21 H 1.09001 * 109.46898 * 175.05434 * 1 2 3 22 22 H 0.97004 * 120.00206 * 180.02562 * 7 6 4 23 23 H 1.00902 * 110.99927 * 151.04044 * 12 2 1 24 24 H 1.09002 * 109.46848 * 299.99836 * 13 12 2 25 25 H 1.09000 * 109.47322 * 59.99316 * 13 12 2 26 26 H 1.07994 * 123.88733 * 0.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3948 -1.7820 10 1 2.1060 2.3990 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.9119 -0.5477 3.9468 16 7 4.0942 -1.2576 5.0257 17 16 2.7157 -1.8332 5.4751 18 7 1.8247 -1.2203 4.3507 19 1 -0.3633 0.4352 0.9310 20 1 -0.3633 0.5887 -0.8423 21 1 -0.3633 -1.0239 -0.0886 22 1 2.9371 -0.1050 -4.2554 23 1 2.9173 -1.1206 1.0288 24 1 2.7589 1.0461 2.1182 25 1 1.0871 0.6163 2.5525 26 1 4.7049 -0.0366 3.4212 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878819939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:53 Heat of formation + Delta-G solvation = 32.083468 kcal Electronic energy + Delta-G solvation = -11853.881647 eV Core-core repulsion = 9672.620736 eV Total energy + Delta-G solvation = -2181.260911 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.74897 -37.77408 -34.80748 -34.09486 -31.76329 -28.22411 -27.22823 -25.08700 -21.79600 -21.51889 -20.22767 -19.11554 -17.25846 -16.73138 -16.43053 -15.68288 -15.38426 -15.00044 -14.51799 -13.90657 -13.72201 -12.98761 -12.72385 -12.65422 -12.55885 -12.20811 -11.94971 -11.80294 -11.78240 -11.68163 -11.04076 -10.73741 -9.90164 -9.09621 -8.28505 -6.35456 -0.23935 0.65707 0.89638 1.16751 1.37499 1.40392 1.50726 2.35829 3.05102 3.47648 3.77161 4.03559 4.19084 4.53237 4.58085 4.72550 4.87335 4.93647 5.01021 5.12119 5.52180 5.71058 5.76400 6.02027 6.51981 6.68219 6.83003 7.34203 8.88215 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.056400 B = 0.007027 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.331664 B = 3983.467402 C = 4048.538945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.187 3.813 3 H 0.017 0.983 4 C -0.522 4.522 5 H 0.032 0.968 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.944 3.056 9 H -0.261 1.261 10 H -0.290 1.290 11 H -0.243 1.243 12 N -0.686 5.686 13 C 0.139 3.861 14 C 0.062 3.938 15 C 0.039 3.961 16 N -0.592 5.592 17 S 0.700 5.300 18 N -0.583 5.583 19 H 0.049 0.951 20 H 0.040 0.960 21 H 0.036 0.964 22 H 0.267 0.733 23 H 0.339 0.661 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 3.881 16.455 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.078 3.922 3 H 0.035 0.965 4 C -0.561 4.561 5 H 0.051 0.949 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.767 3.233 9 H -0.186 1.186 10 H -0.217 1.217 11 H -0.167 1.167 12 N -0.319 5.319 13 C 0.006 3.994 14 C -0.112 4.112 15 C -0.155 4.155 16 N -0.435 5.435 17 S 0.744 5.256 18 N -0.428 5.428 19 H 0.068 0.932 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.076 0.924 23 H 0.157 0.843 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.155 2.396 18.142 18.300 hybrid contribution 1.252 1.867 -2.263 3.190 sum 1.098 4.263 15.878 16.477 Atomic orbital electron populations 1.21773 0.96971 1.00179 0.99196 1.19441 0.93240 0.92414 0.87091 0.96542 1.21244 1.43590 0.94090 0.97173 0.94936 1.25934 0.93886 1.03827 0.94591 1.70060 1.47669 1.38177 1.02684 0.85797 0.80271 0.79600 0.77631 1.18630 1.21668 1.16656 1.60565 1.33283 1.33320 1.04710 1.20456 1.01596 0.92315 0.85047 1.22568 0.90291 0.99562 0.98794 1.24050 0.97749 1.00164 0.93510 1.72348 1.33807 1.18456 1.18882 1.78685 0.83469 1.38828 1.24650 1.72126 1.40628 1.17521 1.12544 0.93192 0.94136 0.94477 0.92424 0.84301 0.91189 0.89607 0.75788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.42 71.98 0.68 -4.42 15 2 C 0.19 8.25 2.26 44.17 0.10 8.35 15 3 H 0.02 0.71 4.95 -2.39 -0.01 0.70 15 4 C -0.52 -28.70 8.84 25.60 0.23 -28.47 15 5 H 0.03 2.04 8.06 -2.91 -0.02 2.01 15 6 C 0.02 0.88 5.47 84.66 0.46 1.35 15 7 N -0.95 -57.54 13.96 21.45 0.30 -57.24 15 8 Si 0.94 41.62 26.99 68.60 1.85 43.47 15 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 10 H -0.29 -12.88 7.11 99.48 0.71 -12.18 15 11 H -0.24 -9.83 6.82 99.48 0.68 -9.15 15 12 N -0.69 -26.63 6.29 -499.46 -3.14 -29.77 15 13 C 0.14 4.22 5.98 85.56 0.51 4.73 15 14 C 0.06 1.76 6.38 42.74 0.27 2.03 15 15 C 0.04 0.96 11.43 84.87 0.97 1.93 15 16 N -0.59 -14.96 11.45 -93.93 -1.08 -16.04 15 17 S 0.70 15.85 23.71 -56.49 -1.34 14.51 15 18 N -0.58 -17.14 11.45 -82.07 -0.94 -18.08 15 19 H 0.05 1.78 7.35 -2.39 -0.02 1.76 15 20 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 23 H 0.34 13.43 8.34 -89.69 -0.75 12.68 15 24 H 0.07 1.82 8.04 -2.39 -0.02 1.80 15 25 H 0.09 2.61 7.36 -2.39 -0.02 2.59 15 26 H 0.23 4.13 8.06 -2.91 -0.02 4.11 15 Total: -1.00 -65.15 241.43 -0.70 -65.85 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.42 Total: 11.80 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 3.22 Total: -14.50 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -4.86 Total: -121.13 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.85 Total: 43.47 kcal Atomic # 16 Polarization: 15.85 SS G_CDS: -1.34 Total: 14.51 kcal Total: -65.15 -0.70 -65.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.934 kcal (2) G-P(sol) polarization free energy of solvation -65.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds