Wall clock time and date at job start Sun Mar 29 2020 21:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47404 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.47202 * 29.99967 * 3 2 1 6 6 H 1.48497 * 109.47322 * 149.99628 * 3 2 1 7 7 C 1.38815 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.44267 * 116.12215 * 0.02562 * 9 7 2 11 11 C 1.51759 * 113.44157 * 183.94206 * 10 9 7 12 12 C 1.53047 * 110.93345 * 324.09053 * 11 10 9 13 13 H 1.08996 * 111.28698 * 300.24119 * 12 11 10 14 14 C 1.55154 * 107.40194 * 178.74999 * 12 11 10 15 15 S 1.83404 * 104.25757 * 273.81839 * 14 12 11 16 16 C 1.83809 * 97.24711 * 356.93073 * 15 14 12 17 17 C 1.54051 * 108.87672 * 62.86068 * 12 11 10 18 18 H 1.08997 * 109.24184 * 181.90089 * 17 12 11 19 19 C 1.43418 * 116.38500 * 180.28467 * 9 7 2 20 20 H 0.97005 * 120.00131 * 0.02562 * 1 2 3 21 21 H 1.09001 * 108.68506 * 62.91804 * 10 9 7 22 22 H 1.08998 * 108.68543 * 304.96386 * 10 9 7 23 23 H 1.09006 * 109.18238 * 203.71381 * 11 10 9 24 24 H 1.09002 * 109.14617 * 84.44296 * 11 10 9 25 25 H 1.09002 * 110.49777 * 155.08760 * 14 12 11 26 26 H 1.08997 * 110.49745 * 32.54909 * 14 12 11 27 27 H 1.09000 * 111.08300 * 93.52164 * 16 15 14 28 28 H 1.09000 * 111.08166 * 217.57302 * 16 15 14 29 29 H 1.09007 * 108.02338 * 59.82547 * 19 9 7 30 30 H 1.08998 * 107.95394 * 303.12257 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1138 -2.2906 -0.0005 11 6 -0.8100 -3.6357 0.0952 12 6 -0.0360 -4.7081 -0.6751 13 1 0.0537 -4.4501 -1.7302 14 6 -0.7978 -6.0479 -0.4971 15 16 -0.1433 -6.7346 1.0726 16 6 1.0971 -5.4187 1.4020 17 6 1.3521 -4.8809 -0.0299 18 1 1.9212 -5.6194 -0.5945 19 6 2.1196 -3.5824 0.0053 20 1 -0.4850 0.8401 -0.0004 21 1 -0.4304 -1.7980 -0.9199 22 1 -0.4222 -1.6766 0.8456 23 1 -1.8138 -3.5498 -0.3211 24 1 -0.8807 -3.9279 1.1429 25 1 -0.5841 -6.7217 -1.3268 26 1 -1.8702 -5.8697 -0.4179 27 1 0.6832 -4.6417 2.0446 28 1 2.0074 -5.8367 1.8316 29 1 2.7367 -3.5728 0.9038 30 1 2.7809 -3.5505 -0.8606 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879557090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:14 Heat of formation + Delta-G solvation = 29.687022 kcal Electronic energy + Delta-G solvation = -12955.746281 eV Core-core repulsion = 10877.921796 eV Total energy + Delta-G solvation = -2077.824485 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.65303 -34.65755 -31.68143 -30.61456 -28.23975 -26.05695 -23.86781 -22.24282 -21.21567 -17.68806 -17.15295 -16.04908 -15.11425 -14.85919 -14.07518 -13.79101 -13.37070 -13.10031 -12.86690 -12.40035 -11.99707 -11.61480 -11.48506 -10.89358 -10.65699 -10.49722 -10.38350 -10.08485 -9.97073 -9.77033 -9.60371 -9.36592 -8.30513 -7.47335 -6.84484 -5.55650 -3.07825 2.12972 2.64348 3.37682 3.43502 3.45281 4.47547 4.88611 5.00690 5.08230 5.31567 5.43240 5.52065 5.63646 5.73478 5.83704 5.97879 6.01058 6.11833 6.37205 6.53895 6.64661 6.74604 6.76178 6.82028 7.71871 7.88883 8.09832 8.52117 9.32566 10.06445 10.24841 11.30331 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.067586 B = 0.008811 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.188789 B = 3177.105291 C = 3373.011691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.190 3.810 11 C -0.139 4.139 12 C -0.084 4.084 13 H 0.092 0.908 14 C -0.063 4.063 15 S -0.328 6.328 16 C -0.052 4.052 17 C -0.092 4.092 18 H 0.078 0.922 19 C 0.181 3.819 20 H 0.247 0.753 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.015 0.985 30 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -9.189 -0.386 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.066 3.934 11 C -0.178 4.178 12 C -0.103 4.103 13 H 0.110 0.890 14 C -0.211 4.211 15 S -0.102 6.102 16 C -0.200 4.200 17 C -0.112 4.112 18 H 0.097 0.903 19 C 0.053 3.947 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.033 0.967 30 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -0.669 -10.105 0.244 10.130 hybrid contribution 0.705 1.805 -0.640 2.041 sum 0.036 -8.300 -0.396 8.309 Atomic orbital electron populations 1.70440 1.04704 1.23996 1.57621 1.24896 0.95803 0.98067 1.01468 0.86105 0.78586 0.83405 0.77571 1.21575 1.21652 1.20707 1.19443 0.91098 0.84001 1.43414 0.90818 1.42804 1.02291 1.00946 1.87319 1.20620 0.80555 0.88819 1.03453 1.22149 0.98898 0.97788 0.98941 1.21982 0.93828 0.93215 1.01298 0.89028 1.24364 1.02579 0.99038 0.95129 1.87328 1.51048 1.38538 1.33310 1.24464 0.98244 0.96876 1.00370 1.22022 0.97033 0.98764 0.93423 0.90346 1.19352 0.92366 0.84683 0.98343 0.94149 0.93608 0.90634 0.92484 0.92950 0.89769 0.89042 0.88569 0.88540 0.96703 0.96633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.07 8.81 55.49 0.49 -25.58 16 2 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.80 9.61 -15.06 -0.14 -6.95 16 8 H 0.07 1.95 7.78 -52.48 -0.41 1.54 16 9 N -0.61 -15.00 3.22 -179.43 -0.58 -15.58 16 10 C 0.19 4.60 4.57 -5.86 -0.03 4.57 16 11 C -0.14 -2.67 4.79 -27.34 -0.13 -2.80 16 12 C -0.08 -1.40 3.02 -88.91 -0.27 -1.67 16 13 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 14 C -0.06 -0.91 6.75 38.30 0.26 -0.65 16 15 S -0.33 -5.14 23.03 -107.50 -2.48 -7.62 16 16 C -0.05 -0.83 5.97 38.25 0.23 -0.60 16 17 C -0.09 -1.56 2.61 -90.05 -0.23 -1.79 16 18 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.18 3.70 5.60 -6.74 -0.04 3.66 16 20 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 21 H 0.05 1.24 6.96 -51.93 -0.36 0.88 16 22 H 0.08 2.07 6.35 -51.93 -0.33 1.75 16 23 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 24 H 0.05 1.01 6.20 -51.93 -0.32 0.69 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 27 H 0.10 1.69 6.92 -51.93 -0.36 1.33 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.02 0.31 7.80 -51.93 -0.41 -0.09 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 241.22 15.07 3.64 3.64 Total: -1.00 -28.01 241.22 -8.67 -36.68 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.26 Total: -1.75 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.45 Total: -6.53 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.09 Total: -41.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.48 Total: -7.62 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.01 -8.67 -36.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879557090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.363 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds