Wall clock time and date at job start Sun Mar 29 2020 21:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99854 * 2 1 4 4 H 1.48500 * 109.46938 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47018 * 119.99690 * 3 2 1 6 6 H 1.48493 * 109.47142 * 239.99966 * 3 2 1 7 7 C 1.38808 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00398 * 162.78423 * 7 2 1 9 9 N 1.36940 * 119.99879 * 342.78307 * 7 2 1 10 10 C 1.47078 * 121.04855 * 152.56719 * 9 7 2 11 11 C 1.53414 * 107.98717 * 123.76203 * 10 9 7 12 12 C 1.53249 * 110.07837 * 56.92570 * 11 10 9 13 13 H 1.08991 * 110.87240 * 64.16686 * 12 11 10 14 14 C 1.55000 * 107.18341 * 184.64623 * 12 11 10 15 15 S 1.83180 * 104.43559 * 89.07400 * 14 12 11 16 16 C 1.83662 * 97.45612 * 3.33032 * 15 14 12 17 17 C 1.53423 * 110.17766 * 301.75463 * 12 11 10 18 18 H 1.09002 * 109.04613 * 175.57474 * 17 12 11 19 19 C 1.46821 * 121.04821 * 332.84973 * 9 7 2 20 20 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.70704 * 243.48407 * 10 9 7 22 22 H 1.09005 * 109.70621 * 4.10918 * 10 9 7 23 23 H 1.08997 * 109.50372 * 296.67040 * 11 10 9 24 24 H 1.09000 * 109.17713 * 176.97486 * 11 10 9 25 25 H 1.09007 * 110.43714 * 207.80901 * 14 12 11 26 26 H 1.09001 * 110.44217 * 330.32869 * 14 12 11 27 27 H 1.09000 * 110.99060 * 264.71135 * 16 15 14 28 28 H 1.09001 * 110.98991 * 140.88401 * 16 15 14 29 29 H 1.08995 * 109.36900 * 352.93752 * 19 9 7 30 30 H 1.08993 * 109.36895 * 112.69354 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0540 -1.2232 -0.2763 9 7 1.3716 -2.3613 0.3521 10 6 1.8159 -3.6614 -0.1729 11 6 2.1192 -4.5758 1.0210 12 6 0.8821 -4.6990 1.9170 13 1 0.0652 -5.1875 1.3861 14 6 1.2952 -5.5341 3.1558 15 16 1.9091 -4.2953 4.3575 16 6 1.5478 -2.7961 3.3600 17 6 0.4445 -3.3130 2.4085 18 1 -0.4797 -3.4129 2.9777 19 6 0.2180 -2.3449 1.2601 20 1 -0.4850 0.8400 -0.0004 21 1 1.0272 -4.0999 -0.7843 22 1 2.7157 -3.5273 -0.7734 23 1 2.9437 -4.1583 1.5989 24 1 2.3991 -5.5632 0.6538 25 1 0.4337 -6.0641 3.5620 26 1 2.0869 -6.2363 2.8947 27 1 2.4278 -2.4776 2.8012 28 1 1.1736 -1.9890 3.9898 29 1 0.0845 -1.3385 1.6567 30 1 -0.6772 -2.6395 0.7126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879557093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:17 Heat of formation + Delta-G solvation = 10.167105 kcal Electronic energy + Delta-G solvation = -13018.353010 eV Core-core repulsion = 10939.682077 eV Total energy + Delta-G solvation = -2078.670932 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.42458 -34.08209 -31.55004 -30.77937 -27.66996 -26.19517 -23.93712 -21.92406 -21.18463 -18.29795 -16.91575 -15.82827 -15.17142 -14.49027 -13.96964 -13.72775 -13.57461 -13.15099 -12.53043 -12.12896 -11.88898 -11.48670 -11.11681 -11.00835 -10.87064 -10.69622 -10.65668 -10.26409 -9.96859 -9.56023 -9.52824 -9.37431 -8.51966 -7.34136 -6.72616 -5.84046 -3.25825 2.29353 2.83293 3.36089 3.42219 3.43567 4.45927 5.01094 5.08629 5.24368 5.35311 5.41487 5.60062 5.73480 5.81153 5.88009 6.03959 6.16141 6.29641 6.36754 6.50332 6.63058 6.67476 6.77442 6.94541 7.20534 7.54578 7.74873 8.38590 9.15604 9.78760 10.36932 11.24656 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.043509 B = 0.010553 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.391829 B = 2652.523168 C = 2871.041766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.131 4.131 12 C -0.083 4.083 13 H 0.083 0.917 14 C -0.063 4.063 15 S -0.341 6.341 16 C -0.038 4.038 17 C -0.110 4.110 18 H 0.066 0.934 19 C 0.181 3.819 20 H 0.255 0.745 21 H 0.020 0.980 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -7.910 4.123 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.102 4.102 13 H 0.101 0.899 14 C -0.211 4.211 15 S -0.116 6.116 16 C -0.186 4.186 17 C -0.132 4.132 18 H 0.085 0.915 19 C 0.053 3.947 20 H 0.065 0.935 21 H 0.038 0.962 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.533 -7.884 5.207 9.572 hybrid contribution -0.121 0.928 -1.029 1.390 sum 1.412 -6.956 4.178 8.237 Atomic orbital electron populations 1.70006 1.05253 1.25723 1.53771 1.25023 0.95267 0.98394 1.00808 0.86387 0.78964 0.83353 0.78219 1.21614 1.20944 1.20863 1.19121 0.92665 0.84683 1.41672 0.91611 1.44026 1.35192 1.01445 1.50459 1.21010 0.97619 0.87026 0.92737 1.22230 0.96890 0.99360 0.98574 1.21901 0.98912 0.94699 0.94711 0.89854 1.24259 1.02646 0.98089 0.96123 1.87238 1.85093 1.07392 1.31852 1.24226 1.02794 0.94195 0.97336 1.22456 0.96885 0.95375 0.98501 0.91543 1.20417 0.88943 0.97919 0.87407 0.93501 0.96242 0.92587 0.91650 0.93070 0.90007 0.89408 0.88007 0.89043 0.88869 0.95944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.18 55.49 0.62 -24.86 16 2 C 0.00 0.10 4.93 -17.43 -0.09 0.02 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.68 9.63 -15.06 -0.15 -6.83 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.10 2.72 -172.93 -0.47 -14.57 16 10 C 0.14 2.88 6.54 -3.51 -0.02 2.86 16 11 C -0.13 -2.23 4.79 -26.39 -0.13 -2.36 16 12 C -0.08 -1.35 2.93 -89.22 -0.26 -1.61 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.06 -0.92 6.75 38.21 0.26 -0.66 16 15 S -0.34 -5.79 23.08 -107.50 -2.48 -8.28 16 16 C -0.04 -0.70 6.14 37.99 0.23 -0.47 16 17 C -0.11 -2.04 2.52 -90.12 -0.23 -2.26 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.18 4.10 4.70 -4.43 -0.02 4.08 16 20 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 23 H 0.06 1.20 6.85 -51.93 -0.36 0.84 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.18 7.82 -51.93 -0.41 0.78 16 27 H 0.10 2.09 7.18 -51.93 -0.37 1.72 16 28 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 245.83 15.07 3.70 3.70 Total: -1.00 -27.55 245.83 -8.42 -35.97 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.37 Total: -1.00 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.40 Total: -7.23 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.15 Total: -39.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -2.48 Total: -8.28 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.55 -8.42 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879557093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.139 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds