Wall clock time and date at job start Sun Mar 29 2020 21:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99854 * 2 1 4 4 H 1.48500 * 109.46938 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47018 * 119.99690 * 3 2 1 6 6 H 1.48493 * 109.47142 * 239.99966 * 3 2 1 7 7 C 1.38808 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00398 * 162.78423 * 7 2 1 9 9 N 1.36940 * 119.99879 * 342.78307 * 7 2 1 10 10 C 1.47078 * 121.04855 * 152.56719 * 9 7 2 11 11 C 1.53414 * 107.98717 * 123.76203 * 10 9 7 12 12 C 1.53249 * 110.07837 * 56.92570 * 11 10 9 13 13 H 1.08991 * 110.87240 * 64.16686 * 12 11 10 14 14 C 1.55000 * 107.18341 * 184.64623 * 12 11 10 15 15 S 1.83180 * 104.43559 * 89.07400 * 14 12 11 16 16 C 1.83662 * 97.45612 * 3.33032 * 15 14 12 17 17 C 1.53423 * 110.17766 * 301.75463 * 12 11 10 18 18 H 1.09002 * 109.04613 * 175.57474 * 17 12 11 19 19 C 1.46821 * 121.04821 * 332.84973 * 9 7 2 20 20 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.70704 * 243.48407 * 10 9 7 22 22 H 1.09005 * 109.70621 * 4.10918 * 10 9 7 23 23 H 1.08997 * 109.50372 * 296.67040 * 11 10 9 24 24 H 1.09000 * 109.17713 * 176.97486 * 11 10 9 25 25 H 1.09007 * 110.43714 * 207.80901 * 14 12 11 26 26 H 1.09001 * 110.44217 * 330.32869 * 14 12 11 27 27 H 1.09000 * 110.99060 * 264.71135 * 16 15 14 28 28 H 1.09001 * 110.98991 * 140.88401 * 16 15 14 29 29 H 1.08995 * 109.36900 * 352.93752 * 19 9 7 30 30 H 1.08993 * 109.36895 * 112.69354 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0540 -1.2232 -0.2763 9 7 1.3716 -2.3613 0.3521 10 6 1.8159 -3.6614 -0.1729 11 6 2.1192 -4.5758 1.0210 12 6 0.8821 -4.6990 1.9170 13 1 0.0652 -5.1875 1.3861 14 6 1.2952 -5.5341 3.1558 15 16 1.9091 -4.2953 4.3575 16 6 1.5478 -2.7961 3.3600 17 6 0.4445 -3.3130 2.4085 18 1 -0.4797 -3.4129 2.9777 19 6 0.2180 -2.3449 1.2601 20 1 -0.4850 0.8400 -0.0004 21 1 1.0272 -4.0999 -0.7843 22 1 2.7157 -3.5273 -0.7734 23 1 2.9437 -4.1583 1.5989 24 1 2.3991 -5.5632 0.6538 25 1 0.4337 -6.0641 3.5620 26 1 2.0869 -6.2363 2.8947 27 1 2.4278 -2.4776 2.8012 28 1 1.1736 -1.9890 3.9898 29 1 0.0845 -1.3385 1.6567 30 1 -0.6772 -2.6395 0.7126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879557093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:17 Heat of formation + Delta-G solvation = -4.662013 kcal Electronic energy + Delta-G solvation = -13018.996048 eV Core-core repulsion = 10939.682077 eV Total energy + Delta-G solvation = -2079.313971 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.97389 -35.85466 -33.29293 -32.43353 -29.21612 -27.91477 -25.64449 -23.45273 -22.83450 -19.91982 -18.65936 -17.26436 -16.99082 -16.15996 -15.54433 -15.37294 -15.05655 -14.78199 -14.15401 -13.75308 -13.34190 -12.94666 -12.86949 -12.75099 -12.50246 -12.41132 -12.21701 -12.03911 -11.75134 -11.19193 -11.08212 -10.77727 -10.53559 -8.75140 -8.59530 -7.87972 -5.31590 0.96856 1.46207 1.48555 1.49572 1.54812 2.50783 3.26711 3.63896 3.71694 3.81015 3.88807 4.16771 4.32604 4.48393 4.60866 4.64234 4.68367 4.81861 4.89862 5.04774 5.08777 5.19010 5.25408 5.28713 5.53384 5.62865 5.70462 6.38281 7.14685 7.85632 8.38622 9.18236 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.043509 B = 0.010553 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.391829 B = 2652.523168 C = 2871.041766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.960 3.040 4 H -0.295 1.295 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.606 5.606 10 C 0.137 3.863 11 C -0.119 4.119 12 C -0.080 4.080 13 H 0.099 0.901 14 C -0.050 4.050 15 S -0.346 6.346 16 C -0.036 4.036 17 C -0.104 4.104 18 H 0.078 0.922 19 C 0.191 3.809 20 H 0.250 0.750 21 H 0.021 0.979 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -9.718 4.681 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.329 5.329 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.100 4.100 13 H 0.118 0.882 14 C -0.197 4.197 15 S -0.120 6.120 16 C -0.184 4.184 17 C -0.126 4.126 18 H 0.096 0.904 19 C 0.064 3.936 20 H 0.059 0.941 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 2.132 -9.724 5.767 11.505 hybrid contribution -0.290 1.426 -1.231 1.906 sum 1.842 -8.298 4.537 9.635 Atomic orbital electron populations 1.70148 1.06481 1.25872 1.55417 1.25681 0.95944 1.01140 1.01378 0.85456 0.77696 0.79753 0.78278 1.22068 1.20615 1.20232 1.19394 0.92797 0.85967 1.40639 0.91794 1.44251 1.35264 1.02181 1.51185 1.21175 0.97357 0.86001 0.94280 1.22094 0.96761 1.00023 0.96963 1.21873 0.99029 0.93485 0.95565 0.88239 1.24323 1.04189 0.97155 0.94077 1.87285 1.85426 1.07009 1.32267 1.24003 1.01645 0.95332 0.97441 1.22298 0.97618 0.95826 0.96819 0.90404 1.20145 0.87943 0.97262 0.88286 0.94088 0.96065 0.92851 0.93011 0.89584 0.87580 0.87288 0.90504 0.89406 0.92304 0.98088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 11.18 21.65 0.24 -53.88 16 2 C -0.05 -2.52 4.93 84.86 0.42 -2.10 16 3 Si 0.96 44.47 29.59 68.60 2.03 46.49 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.26 -13.86 9.63 84.03 0.81 -13.05 16 8 H 0.06 3.39 7.89 -2.91 -0.02 3.36 16 9 N -0.61 -29.24 2.72 -701.03 -1.90 -31.15 16 10 C 0.14 5.40 6.54 86.41 0.57 5.97 16 11 C -0.12 -3.73 4.79 30.82 0.15 -3.58 16 12 C -0.08 -2.36 2.93 -9.88 -0.03 -2.39 16 13 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 14 C -0.05 -1.24 6.75 72.67 0.49 -0.75 16 15 S -0.35 -10.86 23.08 -56.49 -1.30 -12.17 16 16 C -0.04 -1.32 6.14 72.52 0.45 -0.88 16 17 C -0.10 -3.73 2.52 -10.47 -0.03 -3.75 16 18 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 19 C 0.19 8.82 4.70 85.96 0.40 9.23 16 20 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 21 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.05 2.09 7.95 -2.38 -0.02 2.07 16 23 H 0.05 1.78 6.85 -2.39 -0.02 1.77 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.11 2.34 7.82 -2.39 -0.02 2.33 16 27 H 0.08 3.17 7.18 -2.39 -0.02 3.15 16 28 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.06 3.11 6.03 -2.39 -0.01 3.10 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -59.40 245.83 3.39 -56.01 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.11 Total: 5.98 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 3.23 Total: -11.30 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -1.66 Total: -85.03 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -10.86 SS G_CDS: -1.30 Total: -12.17 kcal Total: -59.40 3.39 -56.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879557093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.348 kcal (2) G-P(sol) polarization free energy of solvation -59.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds