Wall clock time and date at job start Sun Mar 29 2020 21:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48503 * 109.46874 * 270.00098 * 3 2 1 5 5 H 1.48494 * 109.47082 * 30.00136 * 3 2 1 6 6 H 1.48499 * 109.46918 * 150.00468 * 3 2 1 7 7 C 1.38811 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00489 * 197.18994 * 7 2 1 9 9 N 1.36945 * 119.99555 * 17.18319 * 7 2 1 10 10 C 1.46720 * 120.11086 * 27.62537 * 9 7 2 11 11 C 1.53589 * 109.88091 * 129.21085 * 10 9 7 12 12 C 1.52465 * 108.14953 * 52.96199 * 11 10 9 13 13 H 1.09006 * 110.02530 * 57.08242 * 12 11 10 14 14 C 1.54343 * 112.09857 * 179.60465 * 12 11 10 15 15 S 1.83874 * 101.61330 * 162.07810 * 14 12 11 16 16 C 1.84268 * 97.44215 * 337.31556 * 15 14 12 17 17 C 1.53405 * 103.69783 * 355.81910 * 16 15 14 18 18 H 1.09001 * 109.25524 * 271.88064 * 17 16 15 19 19 C 1.47409 * 120.10569 * 207.59905 * 9 7 2 20 20 H 0.97001 * 119.99894 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.40258 * 9.08746 * 10 9 7 22 22 H 1.08998 * 109.40069 * 249.34113 * 10 9 7 23 23 H 1.08999 * 109.72797 * 293.30213 * 11 10 9 24 24 H 1.09002 * 109.73020 * 172.62849 * 11 10 9 25 25 H 1.09001 * 110.99745 * 280.16122 * 14 12 11 26 26 H 1.09000 * 110.99823 * 43.99059 * 14 12 11 27 27 H 1.09007 * 110.04643 * 237.60458 * 16 15 14 28 28 H 1.08993 * 111.32187 * 114.65777 * 16 15 14 29 29 H 1.09002 * 109.86915 * 113.06357 * 19 9 7 30 30 H 1.08997 * 109.88052 * 351.99907 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0540 -1.2232 0.2758 9 7 1.3714 -2.3614 -0.3514 10 6 0.2264 -2.3225 -1.2681 11 6 0.4326 -3.3346 -2.4047 12 6 0.7324 -4.6936 -1.7819 13 1 -0.0773 -4.9842 -1.1125 14 6 0.9469 -5.7871 -2.8498 15 16 1.8073 -7.0896 -1.8783 16 6 2.4640 -5.9990 -0.5460 17 6 2.0515 -4.5907 -0.9931 18 1 2.8254 -4.1779 -1.6402 19 6 1.8321 -3.6527 0.1901 20 1 -0.4850 0.8401 0.0004 21 1 0.1325 -1.3208 -1.6878 22 1 -0.6833 -2.5716 -0.7219 23 1 1.2708 -3.0225 -3.0277 24 1 -0.4721 -3.3985 -3.0093 25 1 -0.0065 -6.1512 -3.2329 26 1 1.5782 -5.4231 -3.6604 27 1 3.5498 -6.0814 -0.4970 28 1 2.0178 -6.2395 0.4189 29 1 1.0747 -4.0667 0.8558 30 1 2.7676 -3.5147 0.7321 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879557095.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:20 Heat of formation + Delta-G solvation = 8.854892 kcal Electronic energy + Delta-G solvation = -12796.520686 eV Core-core repulsion = 10717.792852 eV Total energy + Delta-G solvation = -2078.727834 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.40681 -34.23390 -31.57899 -31.04301 -27.91935 -26.02867 -23.96674 -21.48724 -20.91386 -19.30033 -16.76739 -16.10449 -14.86794 -14.57786 -14.19122 -13.98148 -13.36168 -12.94458 -12.76348 -12.34741 -11.95326 -11.74262 -11.52678 -11.04531 -10.83239 -10.52165 -10.40097 -10.21266 -10.11225 -9.74813 -9.57022 -9.47107 -8.48820 -7.53520 -6.75702 -5.84246 -3.27276 2.07788 2.58872 3.34862 3.42023 3.43035 4.44148 4.94350 4.97202 5.15088 5.33850 5.36633 5.46216 5.64248 5.67099 5.84781 5.94492 6.09150 6.13813 6.21419 6.49379 6.57348 6.66890 6.70363 6.87065 7.30563 7.60031 7.75282 8.38753 9.16125 9.78300 10.32872 11.24197 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.063293 B = 0.008400 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.279581 B = 3332.561708 C = 3547.066484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.084 4.084 13 H 0.078 0.922 14 C -0.056 4.056 15 S -0.338 6.338 16 C -0.050 4.050 17 C -0.112 4.112 18 H 0.078 0.922 19 C 0.160 3.840 20 H 0.254 0.746 21 H 0.087 0.913 22 H 0.020 0.980 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.023 0.977 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -8.565 -3.712 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.104 4.104 13 H 0.097 0.903 14 C -0.204 4.204 15 S -0.110 6.110 16 C -0.198 4.198 17 C -0.134 4.134 18 H 0.096 0.904 19 C 0.032 3.968 20 H 0.064 0.936 21 H 0.105 0.895 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.041 0.959 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.855 -9.626 -3.869 10.539 hybrid contribution 0.296 1.978 0.131 2.004 sum 2.150 -7.648 -3.738 8.780 Atomic orbital electron populations 1.70045 1.05267 1.25602 1.53695 1.25052 0.95302 0.98473 1.00692 0.86278 0.79133 0.83564 0.77727 1.21401 1.21711 1.20394 1.19222 0.92741 0.84849 1.41887 0.91585 1.44139 1.35696 1.01302 1.50316 1.20781 0.88698 0.97745 0.88092 1.22194 1.00429 0.94453 0.99974 1.22021 0.98259 0.94861 0.95260 0.90313 1.24231 1.01717 0.95020 0.99442 1.87477 1.70599 1.20707 1.32253 1.23966 1.02808 0.95162 0.97895 1.22391 0.97247 0.93329 1.00415 0.90359 1.20844 0.97913 0.86418 0.91648 0.93560 0.89527 0.96232 0.92370 0.92584 0.88661 0.89538 0.89170 0.89091 0.95936 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.19 55.49 0.62 -25.13 16 2 C 0.00 0.10 4.88 -17.43 -0.09 0.01 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.93 9.55 -15.06 -0.14 -7.07 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.44 3.02 -172.22 -0.52 -14.96 16 10 C 0.17 4.00 5.17 -3.62 -0.02 3.98 16 11 C -0.13 -2.36 5.57 -26.70 -0.15 -2.50 16 12 C -0.08 -1.39 2.17 -89.65 -0.19 -1.58 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 14 C -0.06 -0.80 6.83 37.86 0.26 -0.54 16 15 S -0.34 -5.14 23.30 -107.50 -2.50 -7.64 16 16 C -0.05 -0.73 6.93 37.37 0.26 -0.47 16 17 C -0.11 -1.91 2.29 -90.08 -0.21 -2.12 16 18 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 19 C 0.16 3.22 5.91 -3.76 -0.02 3.20 16 20 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.09 2.25 6.10 -51.93 -0.32 1.94 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.09 1.27 8.00 -51.93 -0.42 0.86 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 249.17 15.07 3.75 3.75 Total: -1.00 -28.17 249.17 -8.47 -36.65 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.50 Total: -1.91 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.30 Total: -7.10 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.10 Total: -40.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.50 Total: -7.64 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.17 -8.47 -36.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879557095.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.501 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds