Wall clock time and date at job start Sun Mar 29 2020 21:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48503 * 109.46874 * 270.00098 * 3 2 1 5 5 H 1.48494 * 109.47082 * 30.00136 * 3 2 1 6 6 H 1.48499 * 109.46918 * 150.00468 * 3 2 1 7 7 C 1.38811 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00489 * 197.18994 * 7 2 1 9 9 N 1.36945 * 119.99555 * 17.18319 * 7 2 1 10 10 C 1.46720 * 120.11086 * 27.62537 * 9 7 2 11 11 C 1.53589 * 109.88091 * 129.21085 * 10 9 7 12 12 C 1.52465 * 108.14953 * 52.96199 * 11 10 9 13 13 H 1.09006 * 110.02530 * 57.08242 * 12 11 10 14 14 C 1.54343 * 112.09857 * 179.60465 * 12 11 10 15 15 S 1.83874 * 101.61330 * 162.07810 * 14 12 11 16 16 C 1.84268 * 97.44215 * 337.31556 * 15 14 12 17 17 C 1.53405 * 103.69783 * 355.81910 * 16 15 14 18 18 H 1.09001 * 109.25524 * 271.88064 * 17 16 15 19 19 C 1.47409 * 120.10569 * 207.59905 * 9 7 2 20 20 H 0.97001 * 119.99894 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.40258 * 9.08746 * 10 9 7 22 22 H 1.08998 * 109.40069 * 249.34113 * 10 9 7 23 23 H 1.08999 * 109.72797 * 293.30213 * 11 10 9 24 24 H 1.09002 * 109.73020 * 172.62849 * 11 10 9 25 25 H 1.09001 * 110.99745 * 280.16122 * 14 12 11 26 26 H 1.09000 * 110.99823 * 43.99059 * 14 12 11 27 27 H 1.09007 * 110.04643 * 237.60458 * 16 15 14 28 28 H 1.08993 * 111.32187 * 114.65777 * 16 15 14 29 29 H 1.09002 * 109.86915 * 113.06357 * 19 9 7 30 30 H 1.08997 * 109.88052 * 351.99907 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0540 -1.2232 0.2758 9 7 1.3714 -2.3614 -0.3514 10 6 0.2264 -2.3225 -1.2681 11 6 0.4326 -3.3346 -2.4047 12 6 0.7324 -4.6936 -1.7819 13 1 -0.0773 -4.9842 -1.1125 14 6 0.9469 -5.7871 -2.8498 15 16 1.8073 -7.0896 -1.8783 16 6 2.4640 -5.9990 -0.5460 17 6 2.0515 -4.5907 -0.9931 18 1 2.8254 -4.1779 -1.6402 19 6 1.8321 -3.6527 0.1901 20 1 -0.4850 0.8401 0.0004 21 1 0.1325 -1.3208 -1.6878 22 1 -0.6833 -2.5716 -0.7219 23 1 1.2708 -3.0225 -3.0277 24 1 -0.4721 -3.3985 -3.0093 25 1 -0.0065 -6.1512 -3.2329 26 1 1.5782 -5.4231 -3.6604 27 1 3.5498 -6.0814 -0.4970 28 1 2.0178 -6.2395 0.4189 29 1 1.0747 -4.0667 0.8558 30 1 2.7676 -3.5147 0.7321 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879557095.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:19 Heat of formation + Delta-G solvation = -6.625614 kcal Electronic energy + Delta-G solvation = -12797.191971 eV Core-core repulsion = 10717.792852 eV Total energy + Delta-G solvation = -2079.399119 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94349 -36.01317 -33.07406 -32.93121 -29.43549 -27.63545 -25.72386 -22.94865 -22.61669 -20.80127 -18.70722 -17.37215 -16.75687 -15.98932 -15.74823 -15.59068 -14.94315 -14.56753 -14.35421 -13.72202 -13.49750 -13.17909 -12.92073 -12.82421 -12.67203 -12.28610 -12.04835 -11.90681 -11.68637 -11.44242 -11.16186 -10.88244 -10.46561 -8.75466 -8.68692 -7.89797 -5.35537 0.90169 1.39783 1.46861 1.48023 1.56653 2.49700 3.24878 3.50199 3.67421 3.79843 3.91355 4.15761 4.27702 4.42389 4.56219 4.61450 4.67288 4.70606 4.77826 4.93967 4.99356 5.18195 5.20838 5.32546 5.48508 5.62738 5.74290 6.36231 7.13239 7.83316 8.32423 9.16535 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.063293 B = 0.008400 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.279581 B = 3332.561708 C = 3547.066484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.178 3.822 11 C -0.115 4.115 12 C -0.080 4.080 13 H 0.071 0.929 14 C -0.045 4.045 15 S -0.345 6.345 16 C -0.043 4.043 17 C -0.101 4.101 18 H 0.071 0.929 19 C 0.158 3.842 20 H 0.250 0.750 21 H 0.052 0.948 22 H -0.006 1.006 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.019 0.981 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -9.691 -4.458 11.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.156 4.156 12 C -0.100 4.100 13 H 0.090 0.910 14 C -0.193 4.193 15 S -0.117 6.117 16 C -0.191 4.191 17 C -0.123 4.123 18 H 0.089 0.911 19 C 0.031 3.969 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.013 0.987 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.133 0.867 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.037 0.963 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.764 -10.786 -4.618 12.054 hybrid contribution 0.010 2.288 0.403 2.323 sum 2.774 -8.498 -4.215 9.883 Atomic orbital electron populations 1.70196 1.06645 1.25902 1.55241 1.25792 0.96040 1.01500 1.01110 0.85282 0.78133 0.79553 0.77578 1.21170 1.22184 1.19318 1.19548 0.93012 0.86090 1.41059 0.91482 1.44408 1.35770 1.02157 1.51094 1.20589 0.87612 0.97447 0.89104 1.21971 1.01556 0.93912 0.98128 1.21922 0.97662 0.94587 0.95830 0.91044 1.24180 1.02912 0.93609 0.98609 1.87575 1.70718 1.20966 1.32483 1.23909 1.03936 0.93200 0.98068 1.22185 0.97379 0.93966 0.98732 0.91099 1.20943 0.97593 0.85381 0.92967 0.94062 0.92938 0.98745 0.92357 0.90320 0.86710 0.88488 0.87537 0.88334 0.96323 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 11.19 21.65 0.24 -54.48 16 2 C -0.05 -2.70 4.88 84.86 0.41 -2.28 16 3 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.27 -14.47 9.55 84.03 0.80 -13.67 16 8 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 9 N -0.61 -30.04 3.02 -698.77 -2.11 -32.15 16 10 C 0.18 8.40 5.17 86.54 0.45 8.85 16 11 C -0.12 -4.04 5.57 30.61 0.17 -3.87 16 12 C -0.08 -2.48 2.17 -10.17 -0.02 -2.50 16 13 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 14 C -0.05 -1.15 6.83 72.44 0.49 -0.65 16 15 S -0.34 -9.44 23.30 -56.49 -1.32 -10.76 16 16 C -0.04 -1.14 6.93 72.12 0.50 -0.64 16 17 C -0.10 -3.26 2.29 -10.45 -0.02 -3.28 16 18 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 19 C 0.16 6.28 5.91 86.07 0.51 6.79 16 20 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 21 H 0.05 2.81 6.10 -2.38 -0.01 2.80 16 22 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.10 2.50 8.00 -2.39 -0.02 2.48 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 Total: -1.00 -60.26 249.17 3.24 -57.02 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.10 Total: 5.26 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.29 Total: -11.27 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.87 Total: -86.64 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.32 Total: -10.76 kcal Total: -60.26 3.24 -57.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879557095.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.399 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds