Wall clock time and date at job start Sun Mar 29 2020 21:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54139 * 110.02377 * 2 1 4 4 S 1.83924 * 102.70336 * 261.61642 * 3 2 1 5 5 C 1.83139 * 94.57991 * 325.09468 * 4 3 2 6 6 C 1.53300 * 110.03461 * 235.61970 * 2 1 3 7 7 H 1.08995 * 110.03684 * 0.53100 * 6 2 1 8 8 C 1.53932 * 105.62207 * 241.83018 * 6 2 1 9 9 N 1.47294 * 106.16852 * 341.42805 * 8 6 2 10 10 C 1.36931 * 126.69868 * 210.88400 * 9 8 6 11 11 H 1.08002 * 120.00438 * 180.02562 * 10 9 8 12 12 C 1.38817 * 119.99680 * 359.74980 * 10 9 8 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48508 * 109.46872 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99997 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00044 * 14 12 10 18 18 C 1.47299 * 106.60620 * 31.15013 * 9 8 6 19 19 H 1.09002 * 109.47110 * 184.37623 * 1 2 3 20 20 H 1.08998 * 109.47448 * 304.38035 * 1 2 3 21 21 H 1.09005 * 109.46750 * 64.37661 * 1 2 3 22 22 H 1.08997 * 110.76988 * 19.91746 * 3 2 1 23 23 H 1.09002 * 110.76160 * 143.31873 * 3 2 1 24 24 H 1.09003 * 110.80051 * 276.63676 * 5 4 3 25 25 H 1.09000 * 110.38806 * 153.47748 * 5 4 3 26 26 H 1.08998 * 110.11851 * 222.25465 * 8 6 2 27 27 H 1.08998 * 110.16512 * 100.63357 * 8 6 2 28 28 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.11631 * 88.02595 * 18 9 8 30 30 H 1.08995 * 110.10866 * 209.67724 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0578 1.4482 0.0000 4 16 2.4420 1.7386 -1.7750 5 6 2.9886 0.0192 -2.0896 6 6 2.0552 -0.8133 -1.1886 7 1 1.2211 -1.2016 -1.7731 8 6 2.8547 -1.9764 -0.5742 9 7 3.1586 -1.5785 0.8110 10 6 4.2608 -1.9342 1.5415 11 1 4.3749 -1.5787 2.5549 12 6 5.2288 -2.7565 0.9814 13 7 5.0898 -3.1898 -0.2536 14 14 6.7287 -3.2481 1.9805 15 1 6.6481 -2.6329 3.3297 16 1 6.7731 -4.7266 2.1119 17 1 7.9576 -2.7751 1.2939 18 6 2.0423 -0.7286 1.2595 19 1 -0.3633 -1.0247 0.0784 20 1 -0.3634 0.5803 0.8481 21 1 -0.3633 0.4444 -0.9267 22 1 1.2899 2.1395 0.3472 23 1 2.9581 1.5314 0.6089 24 1 4.0298 -0.1157 -1.7966 25 1 2.8445 -0.2391 -3.1387 26 1 3.7788 -2.1314 -1.1309 27 1 2.2567 -2.8877 -0.5799 28 1 5.7665 -3.7642 -0.6451 29 1 1.2511 -1.3440 1.6878 30 1 2.3942 -0.0046 1.9943 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885178343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:07 Heat of formation + Delta-G solvation = 18.896688 kcal Electronic energy + Delta-G solvation = -12988.094804 eV Core-core repulsion = 10909.802415 eV Total energy + Delta-G solvation = -2078.292389 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.74611 -33.77192 -31.12802 -30.75744 -27.27700 -26.01384 -25.08890 -22.70962 -20.25039 -18.32047 -16.96289 -15.72623 -15.02703 -14.62024 -14.10080 -13.46717 -13.33852 -12.95578 -12.64297 -12.26280 -11.67289 -11.37384 -11.32971 -10.97328 -10.83550 -10.79869 -10.28284 -10.11587 -10.05636 -9.83336 -9.58388 -9.44704 -8.69806 -7.29592 -6.90421 -5.70201 -3.14407 2.42974 2.77810 3.36514 3.42193 3.44495 4.44267 4.97354 5.13037 5.24301 5.44620 5.58225 5.58485 5.71417 5.80452 5.89211 5.98212 6.15155 6.23724 6.35794 6.37693 6.45716 6.63516 6.77891 6.83874 7.35318 7.55768 7.77401 8.33140 9.15115 9.75959 10.43353 11.31763 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.043292 B = 0.010376 C = 0.009756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.620306 B = 2697.903568 C = 2869.379708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.039 4.039 4 S -0.340 6.340 5 C -0.040 4.040 6 C -0.105 4.105 7 H 0.074 0.926 8 C 0.140 3.860 9 N -0.596 5.596 10 C -0.219 4.219 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.922 5.922 14 Si 0.915 3.085 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.290 1.290 18 C 0.141 3.859 19 H 0.057 0.943 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.009 0.991 28 H 0.253 0.747 29 H 0.022 0.978 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 5.713 -1.158 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C -0.187 4.187 4 S -0.112 6.112 5 C -0.188 4.188 6 C -0.127 4.127 7 H 0.092 0.908 8 C 0.014 3.986 9 N -0.320 5.320 10 C -0.347 4.347 11 H 0.097 0.903 12 C -0.207 4.207 13 N -0.571 5.571 14 Si 0.746 3.254 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.217 1.217 18 C 0.013 3.987 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.470 6.601 -1.886 9.434 hybrid contribution 0.781 -1.263 1.174 1.893 sum -5.690 5.338 -0.712 7.834 Atomic orbital electron populations 1.21872 0.93903 1.01681 1.01337 1.21924 0.95590 0.92709 0.97714 1.24214 1.03441 0.98088 0.92933 1.87409 1.86808 1.21663 1.15360 1.24152 1.03165 0.89337 1.02181 1.22657 0.97426 0.98214 0.94388 0.90762 1.22113 0.99896 0.90124 0.86485 1.44570 1.19673 1.56233 1.11491 1.19149 0.95630 1.24193 0.95741 0.90285 1.24772 0.99143 0.99952 0.96816 1.69609 1.35208 1.39021 1.13231 0.85978 0.82501 0.77979 0.78936 1.20509 1.21720 1.21690 1.21669 0.90963 0.92871 0.93158 0.92423 0.92935 0.92506 0.88857 0.89204 0.88448 0.89001 0.85574 0.97310 0.93629 0.96037 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.91 37.16 0.29 -1.58 16 2 C -0.08 -1.33 0.88 -153.10 -0.13 -1.46 16 3 C -0.04 -0.64 6.37 37.75 0.24 -0.40 16 4 S -0.34 -5.95 23.25 -107.50 -2.50 -8.45 16 5 C -0.04 -0.74 6.75 37.76 0.25 -0.49 16 6 C -0.11 -1.99 3.09 -89.38 -0.28 -2.27 16 7 H 0.07 1.30 7.66 -51.93 -0.40 0.90 16 8 C 0.14 3.31 5.65 -3.12 -0.02 3.29 16 9 N -0.60 -14.85 3.39 -170.61 -0.58 -15.43 16 10 C -0.22 -5.96 10.34 -15.06 -0.16 -6.11 16 11 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 12 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 13 N -0.92 -26.16 10.09 55.49 0.56 -25.61 16 14 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 C 0.14 2.87 6.28 -2.95 -0.02 2.86 16 19 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 20 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.09 1.33 7.79 -51.93 -0.40 0.92 16 23 H 0.09 1.60 7.57 -51.93 -0.39 1.21 16 24 H 0.10 2.03 7.56 -51.93 -0.39 1.63 16 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.13 3.31 4.81 -51.93 -0.25 3.06 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 30 H 0.04 0.86 7.48 -51.93 -0.39 0.47 16 LS Contribution 247.69 15.07 3.73 3.73 Total: -1.00 -28.34 247.69 -8.00 -36.34 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.28 Total: -0.74 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.09 Total: -6.59 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.02 Total: -41.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.50 Total: -8.45 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.34 -8.00 -36.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885178343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.232 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds