Wall clock time and date at job start Sun Mar 29 2020 21:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54139 * 110.02377 * 2 1 4 4 S 1.83924 * 102.70336 * 261.61642 * 3 2 1 5 5 C 1.83139 * 94.57991 * 325.09468 * 4 3 2 6 6 C 1.53300 * 110.03461 * 235.61970 * 2 1 3 7 7 H 1.08995 * 110.03684 * 0.53100 * 6 2 1 8 8 C 1.53932 * 105.62207 * 241.83018 * 6 2 1 9 9 N 1.47294 * 106.16852 * 341.42805 * 8 6 2 10 10 C 1.36931 * 126.69868 * 210.88400 * 9 8 6 11 11 H 1.08002 * 120.00438 * 180.02562 * 10 9 8 12 12 C 1.38817 * 119.99680 * 359.74980 * 10 9 8 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48508 * 109.46872 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99997 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00044 * 14 12 10 18 18 C 1.47299 * 106.60620 * 31.15013 * 9 8 6 19 19 H 1.09002 * 109.47110 * 184.37623 * 1 2 3 20 20 H 1.08998 * 109.47448 * 304.38035 * 1 2 3 21 21 H 1.09005 * 109.46750 * 64.37661 * 1 2 3 22 22 H 1.08997 * 110.76988 * 19.91746 * 3 2 1 23 23 H 1.09002 * 110.76160 * 143.31873 * 3 2 1 24 24 H 1.09003 * 110.80051 * 276.63676 * 5 4 3 25 25 H 1.09000 * 110.38806 * 153.47748 * 5 4 3 26 26 H 1.08998 * 110.11851 * 222.25465 * 8 6 2 27 27 H 1.08998 * 110.16512 * 100.63357 * 8 6 2 28 28 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.11631 * 88.02595 * 18 9 8 30 30 H 1.08995 * 110.10866 * 209.67724 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0578 1.4482 0.0000 4 16 2.4420 1.7386 -1.7750 5 6 2.9886 0.0192 -2.0896 6 6 2.0552 -0.8133 -1.1886 7 1 1.2211 -1.2016 -1.7731 8 6 2.8547 -1.9764 -0.5742 9 7 3.1586 -1.5785 0.8110 10 6 4.2608 -1.9342 1.5415 11 1 4.3749 -1.5787 2.5549 12 6 5.2288 -2.7565 0.9814 13 7 5.0898 -3.1898 -0.2536 14 14 6.7287 -3.2481 1.9805 15 1 6.6481 -2.6329 3.3297 16 1 6.7731 -4.7266 2.1119 17 1 7.9576 -2.7751 1.2939 18 6 2.0423 -0.7286 1.2595 19 1 -0.3633 -1.0247 0.0784 20 1 -0.3634 0.5803 0.8481 21 1 -0.3633 0.4444 -0.9267 22 1 1.2899 2.1395 0.3472 23 1 2.9581 1.5314 0.6089 24 1 4.0298 -0.1157 -1.7966 25 1 2.8445 -0.2391 -3.1387 26 1 3.7788 -2.1314 -1.1309 27 1 2.2567 -2.8877 -0.5799 28 1 5.7665 -3.7642 -0.6451 29 1 1.2511 -1.3440 1.6878 30 1 2.3942 -0.0046 1.9943 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885178343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:07 Heat of formation + Delta-G solvation = 2.959888 kcal Electronic energy + Delta-G solvation = -12988.785875 eV Core-core repulsion = 10909.802415 eV Total energy + Delta-G solvation = -2078.983461 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.32704 -35.61515 -32.70115 -32.62160 -28.66078 -27.78197 -26.72895 -24.39317 -22.00932 -19.87127 -18.83271 -17.23128 -16.80023 -16.35450 -15.66553 -15.11692 -14.87272 -14.48285 -14.31458 -13.71670 -13.28270 -13.02403 -12.83538 -12.68559 -12.47009 -12.40746 -11.94086 -11.82703 -11.65158 -11.62110 -11.25444 -11.06644 -10.61897 -8.90753 -8.67464 -7.76847 -5.23368 1.03301 1.35133 1.46661 1.46955 1.56971 2.48419 3.30233 3.60378 3.64234 3.85510 3.91160 4.09164 4.22998 4.39934 4.54561 4.68757 4.79828 4.83039 4.87656 4.90565 5.12557 5.16904 5.30119 5.39498 5.49659 5.49990 5.81657 6.35325 7.09369 7.76019 8.43389 9.23026 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.043292 B = 0.010376 C = 0.009756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.620306 B = 2697.903568 C = 2869.379708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 C -0.036 4.036 4 S -0.327 6.327 5 C -0.041 4.041 6 C -0.097 4.097 7 H 0.093 0.907 8 C 0.144 3.856 9 N -0.619 5.619 10 C -0.232 4.232 11 H 0.082 0.918 12 C -0.066 4.066 13 N -0.947 5.947 14 Si 0.977 3.023 15 H -0.267 1.267 16 H -0.293 1.293 17 H -0.292 1.292 18 C 0.137 3.863 19 H 0.055 0.945 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.126 0.874 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.097 0.903 27 H -0.016 1.016 28 H 0.247 0.753 29 H 0.027 0.973 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 7.060 -0.772 10.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.184 4.184 4 S -0.099 6.099 5 C -0.189 4.189 6 C -0.118 4.118 7 H 0.112 0.888 8 C 0.017 3.983 9 N -0.343 5.343 10 C -0.361 4.361 11 H 0.100 0.900 12 C -0.258 4.258 13 N -0.597 5.597 14 Si 0.806 3.194 15 H -0.191 1.191 16 H -0.220 1.220 17 H -0.220 1.220 18 C 0.010 3.990 19 H 0.074 0.926 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.144 0.856 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.002 0.998 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.719 7.972 -1.487 11.196 hybrid contribution 1.143 -1.668 1.074 2.289 sum -6.576 6.304 -0.413 9.119 Atomic orbital electron populations 1.21831 0.90906 1.02276 1.03094 1.21886 0.97851 0.92440 0.95066 1.24260 1.03749 0.98160 0.92195 1.87376 1.86502 1.20248 1.15802 1.24006 1.01154 0.90581 1.03162 1.22585 0.97350 0.96821 0.95043 0.88827 1.21901 0.98822 0.91294 0.86302 1.44834 1.20361 1.56977 1.12091 1.19488 0.96513 1.23924 0.96157 0.90007 1.25561 1.01840 1.00519 0.97896 1.69862 1.35773 1.39574 1.14508 0.85014 0.79046 0.77196 0.78123 1.19148 1.22019 1.21959 1.21873 0.89739 0.92591 0.94803 0.92591 0.90663 0.91168 0.85561 0.90820 0.91737 0.87104 0.88533 0.99775 0.94253 0.95570 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 7.91 71.98 0.57 -2.52 16 2 C -0.07 -2.26 0.88 -51.27 -0.04 -2.31 16 3 C -0.04 -1.09 6.37 72.37 0.46 -0.63 16 4 S -0.33 -10.66 23.25 -56.49 -1.31 -11.98 16 5 C -0.04 -1.47 6.75 72.37 0.49 -0.98 16 6 C -0.10 -3.55 3.09 -9.99 -0.03 -3.58 16 7 H 0.09 3.08 7.66 -2.39 -0.02 3.06 16 8 C 0.14 6.91 5.65 86.54 0.49 7.40 16 9 N -0.62 -31.12 3.39 -693.70 -2.35 -33.47 16 10 C -0.23 -12.77 10.34 84.04 0.87 -11.90 16 11 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 12 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16 13 N -0.95 -55.44 10.09 21.65 0.22 -55.22 16 14 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 18 C 0.14 5.40 6.28 86.65 0.54 5.94 16 19 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 20 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 21 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.13 3.03 7.79 -2.39 -0.02 3.01 16 23 H 0.07 2.50 7.57 -2.39 -0.02 2.48 16 24 H 0.06 2.74 7.56 -2.39 -0.02 2.73 16 25 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.10 5.28 4.81 -2.39 -0.01 5.27 16 27 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 29 H 0.03 1.02 7.71 -2.39 -0.02 1.01 16 30 H 0.05 1.84 7.48 -2.39 -0.02 1.83 16 Total: -1.00 -61.18 247.69 3.50 -57.68 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.11 Total: 7.45 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 3.81 Total: -11.78 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.13 Total: -88.69 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.31 Total: -11.98 kcal Total: -61.18 3.50 -57.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885178343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.637 kcal (2) G-P(sol) polarization free energy of solvation -61.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds