Wall clock time and date at job start Sun Mar 29 2020 22:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64792 * 0.02562 * 9 7 2 11 11 C 1.54914 * 104.83159 * 204.08975 * 10 9 7 12 12 C 1.55151 * 101.58023 * 322.99181 * 11 10 9 13 13 C 1.47020 * 125.64525 * 179.71622 * 9 7 2 14 14 H 1.09001 * 109.88743 * 59.55748 * 13 9 7 15 15 C 1.53007 * 109.88323 * 298.39113 * 13 9 7 16 16 O 1.43749 * 109.63016 * 180.36089 * 15 13 9 17 17 C 1.44579 * 104.91801 * 215.71069 * 16 15 13 18 18 C 1.54910 * 101.63894 * 36.27235 * 17 16 15 19 19 O 1.43371 * 109.62802 * 61.15035 * 15 13 9 20 20 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 21 21 H 1.08999 * 110.36700 * 322.93272 * 10 9 7 22 22 H 1.08998 * 110.36896 * 85.14511 * 10 9 7 23 23 H 1.09002 * 111.00120 * 81.06703 * 11 10 9 24 24 H 1.08994 * 111.00396 * 204.91711 * 11 10 9 25 25 H 1.09008 * 110.71730 * 153.86254 * 12 11 10 26 26 H 1.09000 * 110.72128 * 277.13383 * 12 11 10 27 27 H 1.08994 * 109.62687 * 300.75809 * 15 13 9 28 28 H 1.09006 * 111.09263 * 278.16011 * 17 16 15 29 29 H 1.09003 * 110.98350 * 154.33582 * 17 16 15 30 30 H 1.09000 * 110.69518 * 205.96027 * 18 17 16 31 31 H 1.09004 * 110.84173 * 82.82023 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0005 11 6 -0.4019 -3.9324 0.6111 12 6 0.7785 -4.7524 0.0269 13 6 1.9319 -3.7274 -0.0048 14 1 2.5614 -3.8530 0.8761 15 6 2.7649 -3.9165 -1.2743 16 8 3.3481 -5.2303 -1.2780 17 6 4.6468 -5.0593 -1.8898 18 6 5.0663 -3.6694 -1.3494 19 8 3.8197 -2.9460 -1.3072 20 1 -0.4850 0.8401 0.0004 21 1 -0.5997 -1.7588 0.6147 22 1 -0.5267 -2.4849 -1.0190 23 1 -0.3531 -3.8982 1.6995 24 1 -1.3590 -4.3328 0.2769 25 1 1.0237 -5.5923 0.6771 26 1 0.5467 -5.0980 -0.9805 27 1 2.1286 -3.7957 -2.1510 28 1 4.5699 -5.0482 -2.9771 29 1 5.3397 -5.8324 -1.5576 30 1 5.7685 -3.1875 -2.0297 31 1 5.4960 -3.7549 -0.3513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885407342.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:12 Heat of formation + Delta-G solvation = -58.834854 kcal Electronic energy + Delta-G solvation = -15167.061988 eV Core-core repulsion = 12642.646036 eV Total energy + Delta-G solvation = -2524.415953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86669 -37.06159 -34.44910 -32.44686 -30.33521 -29.12160 -27.53664 -24.58454 -23.06046 -22.73737 -20.08161 -19.46935 -17.05931 -16.66013 -16.27998 -15.18316 -14.69890 -14.37780 -13.79464 -13.69218 -13.22364 -12.32482 -12.19627 -11.93784 -11.79614 -11.51744 -11.30396 -10.88974 -10.75435 -10.41270 -10.03122 -9.97491 -9.85128 -9.65235 -9.41177 -8.93456 -8.51677 -6.78394 -5.54467 -2.95719 3.47413 3.52199 3.55697 3.85696 4.52963 4.64282 4.89441 5.13083 5.35080 5.51437 5.52855 5.62346 5.72500 5.76657 5.84753 5.94464 6.07664 6.14912 6.34089 6.42330 6.60916 6.70220 6.78319 7.09369 7.58544 7.65722 7.86000 7.97671 8.44878 9.34976 9.93361 10.55712 11.50048 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.013168 C = 0.009351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.678932 B = 2125.848909 C = 2993.688608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.017 4.017 3 Si 0.914 3.086 4 H -0.291 1.291 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.204 4.204 8 H 0.088 0.912 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.147 4.147 12 C -0.117 4.117 13 C 0.152 3.848 14 H 0.042 0.958 15 C 0.222 3.778 16 O -0.386 6.386 17 C 0.017 3.983 18 C 0.015 3.985 19 O -0.356 6.356 20 H 0.250 0.750 21 H 0.109 0.891 22 H 0.011 0.989 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 -9.307 -2.152 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.212 4.212 3 Si 0.745 3.255 4 H -0.218 1.218 5 H -0.207 1.207 6 H -0.219 1.219 7 C -0.333 4.333 8 H 0.106 0.894 9 N -0.308 5.308 10 C 0.024 3.976 11 C -0.186 4.186 12 C -0.155 4.155 13 C 0.043 3.957 14 H 0.060 0.940 15 C 0.125 3.875 16 O -0.306 6.306 17 C -0.060 4.060 18 C -0.062 4.062 19 O -0.277 6.277 20 H 0.060 0.940 21 H 0.127 0.873 22 H 0.029 0.971 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.692 -9.024 -2.071 10.868 hybrid contribution 0.669 0.774 -0.332 1.076 sum 6.360 -8.249 -2.404 10.690 Atomic orbital electron populations 1.69813 1.04851 1.24517 1.58578 1.24793 0.95697 0.97679 1.02998 0.86060 0.78615 0.83410 0.77417 1.21808 1.20707 1.21882 1.19300 0.91060 0.81840 1.41081 0.89397 1.44605 1.01768 0.99183 1.85288 1.22022 0.84300 0.93029 0.98271 1.23026 0.96437 0.99078 1.00071 1.22430 0.95754 0.96848 1.00493 1.21275 0.93229 0.87618 0.93582 0.94001 1.25244 0.88592 0.73025 1.00637 1.89144 1.30063 1.29947 1.81446 1.24231 0.85699 0.97891 0.98219 1.24125 0.89236 0.91629 1.01223 1.89152 1.13296 1.29718 1.95488 0.93969 0.87332 0.97070 0.92198 0.92371 0.91974 0.92048 0.90914 0.91428 0.88251 0.89247 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 10.09 55.49 0.56 -27.17 16 2 C -0.02 -0.51 5.49 -17.43 -0.10 -0.60 16 3 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.20 -5.87 9.33 -15.06 -0.14 -6.01 16 8 H 0.09 2.52 6.57 -52.49 -0.34 2.17 16 9 N -0.58 -15.44 3.13 -162.56 -0.51 -15.95 16 10 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 11 C -0.15 -2.94 7.09 -24.58 -0.17 -3.12 16 12 C -0.12 -2.24 6.22 -24.89 -0.15 -2.39 16 13 C 0.15 3.39 3.24 -66.94 -0.22 3.18 16 14 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.22 4.60 3.54 37.16 0.13 4.73 16 16 O -0.39 -6.88 11.05 -59.05 -0.65 -7.53 16 17 C 0.02 0.23 7.95 38.17 0.30 0.53 16 18 C 0.01 0.23 8.07 38.17 0.31 0.54 16 19 O -0.36 -7.61 9.02 -59.05 -0.53 -8.15 16 20 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 21 H 0.11 3.04 5.87 -51.93 -0.30 2.73 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 26 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 27 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 250.98 15.07 3.78 3.78 Total: -1.00 -31.64 250.98 -6.85 -38.49 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.42 Total: -1.98 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.05 Total: 0.56 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.05 Total: -43.12 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.18 Total: -15.68 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.64 -6.85 -38.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885407342.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.342 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds