Wall clock time and date at job start Sun Mar 29 2020 22:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48500 * 109.47140 * 240.00292 * 3 2 1 5 5 H 1.48502 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46964 * 120.00122 * 3 2 1 7 7 C 1.38810 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 196.93987 * 7 2 1 9 9 N 1.36932 * 119.99978 * 16.93793 * 7 2 1 10 10 C 1.47157 * 121.06267 * 26.27393 * 9 7 2 11 11 C 1.53271 * 108.48303 * 129.25780 * 10 9 7 12 12 O 1.42990 * 109.30150 * 52.10841 * 11 10 9 13 13 C 1.42774 * 114.13065 * 297.83659 * 12 11 10 14 14 H 1.09003 * 109.00030 * 303.11834 * 13 12 11 15 15 C 1.52794 * 109.98802 * 183.24022 * 13 12 11 16 16 O 1.42881 * 109.72488 * 296.23217 * 15 13 12 17 17 C 1.43067 * 113.13775 * 297.72342 * 16 15 13 18 18 C 1.53037 * 108.61486 * 63.34742 * 17 16 15 19 19 C 1.47309 * 121.06031 * 206.28949 * 9 7 2 20 20 H 1.08997 * 110.09540 * 351.22901 * 19 9 7 21 21 H 0.97005 * 119.99870 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.63298 * 248.95144 * 10 9 7 23 23 H 1.08996 * 109.63626 * 9.35162 * 10 9 7 24 24 H 1.09001 * 109.50258 * 172.05770 * 11 10 9 25 25 H 1.09008 * 109.49971 * 292.12837 * 11 10 9 26 26 H 1.08990 * 109.43482 * 56.31514 * 15 13 12 27 27 H 1.09007 * 109.42860 * 176.16284 * 15 13 12 28 28 H 1.08996 * 110.80288 * 303.02129 * 17 16 15 29 29 H 1.09003 * 108.85387 * 182.50616 * 17 16 15 30 30 H 1.09002 * 109.48233 * 180.85179 * 18 17 16 31 31 H 1.08997 * 109.50434 * 60.79688 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2226 0.2720 9 7 1.3701 -2.3621 -0.3465 10 6 0.1983 -2.3463 -1.2366 11 6 0.4273 -3.3639 -2.3596 12 8 0.7755 -4.6277 -1.7886 13 6 1.9876 -4.6132 -1.0341 14 1 2.7983 -4.2607 -1.6717 15 6 2.3102 -6.0216 -0.5371 16 8 1.2911 -6.4605 0.3631 17 6 1.1912 -5.6497 1.5376 18 6 0.7835 -4.2347 1.1211 19 6 1.8323 -3.6657 0.1606 20 1 2.7870 -3.5507 0.6739 21 1 -0.4850 0.8401 0.0004 22 1 -0.6938 -2.6182 -0.6723 23 1 0.0739 -1.3500 -1.6606 24 1 -0.4848 -3.4689 -2.9471 25 1 1.2369 -3.0194 -3.0032 26 1 2.3619 -6.7029 -1.3862 27 1 3.2704 -6.0129 -0.0211 28 1 2.1443 -5.6134 2.0652 29 1 0.4279 -6.0705 2.1923 30 1 0.7178 -3.6002 2.0051 31 1 -0.1858 -4.2668 0.6237 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885407376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:06 Heat of formation + Delta-G solvation = -85.601294 kcal Electronic energy + Delta-G solvation = -15394.838495 eV Core-core repulsion = 12869.261863 eV Total energy + Delta-G solvation = -2525.576633 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.08601 -38.41212 -36.44850 -33.94955 -32.42760 -31.56966 -29.23732 -26.41214 -24.84755 -24.19408 -23.03087 -20.21427 -18.89976 -17.50818 -17.26353 -16.99623 -16.74885 -16.05483 -15.99534 -15.13199 -14.85973 -14.46600 -14.31424 -14.01939 -13.17993 -12.95041 -12.80368 -12.69095 -12.30816 -12.18098 -12.08742 -11.86112 -11.63051 -11.08589 -10.75456 -10.54327 -10.38025 -8.74098 -7.91816 -5.39181 1.44634 1.46923 1.53885 2.45212 2.75986 3.15994 3.21838 3.48729 3.91971 3.99987 4.10818 4.24911 4.41991 4.45574 4.50307 4.53262 4.57531 4.68130 4.80141 4.90382 5.06755 5.14371 5.18768 5.36426 5.56985 5.57960 6.19884 6.28675 6.41416 7.04455 7.73387 8.28947 9.13352 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045882 B = 0.010407 C = 0.009715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.113249 B = 2689.791505 C = 2881.436218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.267 4.267 8 H 0.071 0.929 9 N -0.605 5.605 10 C 0.148 3.852 11 C 0.048 3.952 12 O -0.386 6.386 13 C 0.045 3.955 14 H 0.061 0.939 15 C 0.074 3.926 16 O -0.388 6.388 17 C 0.068 3.932 18 C -0.153 4.153 19 C 0.134 3.866 20 H 0.074 0.926 21 H 0.251 0.749 22 H -0.002 1.002 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -9.257 -0.882 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.089 0.911 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.030 4.030 12 O -0.305 6.305 13 C -0.014 4.014 14 H 0.079 0.921 15 C -0.003 4.003 16 O -0.307 6.307 17 C -0.009 4.009 18 C -0.193 4.193 19 C 0.027 3.973 20 H 0.093 0.907 21 H 0.060 0.940 22 H 0.016 0.984 23 H 0.084 0.916 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.481 -9.418 -0.937 10.471 hybrid contribution 0.156 1.895 0.173 1.909 sum 4.637 -7.523 -0.764 8.870 Atomic orbital electron populations 1.70191 1.06744 1.26067 1.55023 1.25818 0.96049 1.01559 1.00970 0.85294 0.77517 0.78923 0.78417 1.20276 1.22072 1.20009 1.19499 0.92942 0.85648 1.41604 0.91112 1.44447 1.33579 1.01776 1.52965 1.21214 0.88241 0.97946 0.90385 1.23176 1.00297 0.84303 0.95176 1.87799 1.42488 1.31258 1.68932 1.23212 0.87232 0.97801 0.93175 0.92118 1.22687 0.91286 0.92383 0.93945 1.88021 1.57375 1.53064 1.32239 1.22674 1.02175 0.88916 0.87098 1.22447 1.00087 0.97392 0.99383 1.21431 0.96644 0.85826 0.93353 0.90744 0.93986 0.98425 0.91606 0.87860 0.93640 0.86959 0.89012 0.90807 0.88000 0.93145 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 11.14 21.65 0.24 -55.02 16 2 C -0.05 -2.68 4.95 84.86 0.42 -2.26 16 3 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.27 -14.62 9.67 84.03 0.81 -13.81 16 8 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 9 N -0.61 -30.72 2.74 -673.10 -1.84 -32.56 16 10 C 0.15 7.40 5.01 86.34 0.43 7.84 16 11 C 0.05 1.96 6.99 72.07 0.50 2.47 16 12 O -0.39 -15.53 9.99 -144.26 -1.44 -16.97 16 13 C 0.05 1.63 2.92 30.62 0.09 1.72 16 14 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.07 2.08 6.47 71.91 0.47 2.54 16 16 O -0.39 -12.45 10.77 -144.26 -1.55 -14.00 16 17 C 0.07 2.05 6.83 71.99 0.49 2.54 16 18 C -0.15 -6.08 5.40 30.67 0.17 -5.92 16 19 C 0.13 5.59 2.80 44.99 0.13 5.72 16 20 H 0.07 2.96 7.98 -2.39 -0.02 2.94 16 21 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 22 H 0.00 -0.13 7.42 -2.38 -0.02 -0.15 16 23 H 0.07 3.63 6.13 -2.39 -0.01 3.62 16 24 H 0.10 3.66 8.14 -2.39 -0.02 3.65 16 25 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.84 6.92 -2.39 -0.02 1.82 16 Total: -1.00 -64.73 246.36 2.04 -62.69 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.10 Total: 8.61 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 3.51 Total: 0.84 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.60 Total: -87.59 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -3.00 Total: -30.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.73 2.04 -62.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885407376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.912 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds