Wall clock time and date at job start Sun Mar 29 2020 21:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00208 * 2 1 4 4 O 1.20831 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00293 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.96434 * 49.66540 * 5 3 2 7 7 C 1.53953 * 113.76657 * 277.98744 * 5 3 2 8 8 C 1.53946 * 86.28831 * 222.09198 * 7 5 3 9 9 N 1.47585 * 113.76902 * 181.35044 * 5 3 2 10 10 C 1.34780 * 134.49071 * 318.92086 * 9 5 3 11 11 O 1.21689 * 119.99993 * 0.02562 * 10 9 5 12 12 C 1.46366 * 119.99725 * 180.02562 * 10 9 5 13 13 H 1.08006 * 120.00361 * 353.93363 * 12 10 9 14 14 C 1.40049 * 119.99801 * 173.92534 * 12 10 9 15 15 N 1.30670 * 120.00281 * 6.15240 * 14 12 10 16 16 Si 1.86808 * 120.00108 * 186.15235 * 14 12 10 17 17 H 1.48501 * 109.47168 * 94.98368 * 16 14 12 18 18 H 1.48498 * 109.47078 * 214.98244 * 16 14 12 19 19 H 1.48496 * 109.46758 * 334.98529 * 16 14 12 20 20 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46950 * 299.99641 * 1 2 3 22 22 H 1.09002 * 109.47244 * 59.99864 * 1 2 3 23 23 H 1.09000 * 113.74026 * 336.43776 * 7 5 3 24 24 H 1.09001 * 113.73637 * 107.63989 * 7 5 3 25 25 H 1.09000 * 113.76764 * 137.91079 * 8 7 5 26 26 H 1.09000 * 113.76624 * 269.19201 * 8 7 5 27 27 H 0.96997 * 120.00737 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0248 0.6485 -0.7659 7 6 4.1968 1.1115 1.3944 8 6 5.1410 2.2589 0.9921 9 7 4.0897 2.6544 0.0313 10 6 3.7460 3.8092 -0.5727 11 8 2.8026 3.8368 -1.3408 12 6 4.5074 5.0301 -0.3046 13 1 5.2810 5.0296 0.4491 14 6 4.2329 6.1990 -1.0255 15 7 3.2202 6.2353 -1.8505 16 14 5.3146 7.7064 -0.8078 17 1 6.3587 7.7231 -1.8637 18 1 4.4830 8.9320 -0.9146 19 1 5.9620 7.6623 0.5279 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 3.5228 1.3643 2.2129 24 1 4.7011 0.1560 1.5389 25 1 5.3097 2.9875 1.7850 26 1 6.0641 1.9230 0.5197 27 1 3.0303 7.0447 -2.3501 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888064254.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:26 Heat of formation + Delta-G solvation = -78.307950 kcal Electronic energy + Delta-G solvation = -14386.143204 eV Core-core repulsion = 11725.049740 eV Total energy + Delta-G solvation = -2661.093464 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.15214 -38.35069 -35.67106 -35.58360 -32.42072 -29.00286 -27.91596 -26.28173 -25.55114 -21.56561 -21.05170 -18.66979 -17.34865 -16.88395 -16.22016 -15.68065 -15.33246 -14.29245 -13.99088 -13.85036 -12.94855 -12.52550 -12.38853 -12.07823 -11.71480 -11.48432 -11.27277 -11.11415 -10.94870 -10.69315 -10.38555 -10.32142 -10.18030 -9.58441 -8.82242 -7.52073 -7.34328 -6.16306 -4.60603 2.83009 3.11485 3.16364 3.22202 3.26279 4.00694 4.30710 4.61005 4.79102 5.24683 5.35617 5.40740 5.45594 5.64044 5.78294 5.86802 5.89866 5.93949 6.17969 6.51770 6.64934 6.89977 7.46556 8.09195 8.35459 8.52897 9.04695 9.56386 10.62385 10.81903 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.046787 B = 0.009238 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.311627 B = 3030.229431 C = 3512.761459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.442 3.558 4 O -0.453 6.453 5 C 0.137 3.863 6 H 0.106 0.894 7 C -0.136 4.136 8 C 0.114 3.886 9 N -0.645 5.645 10 C 0.577 3.423 11 O -0.548 6.548 12 C -0.536 4.536 13 H 0.068 0.932 14 C 0.086 3.914 15 N -0.768 5.768 16 Si 0.910 3.090 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.264 1.264 20 H 0.094 0.906 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -10.443 5.796 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.290 6.290 3 C 0.281 3.719 4 O -0.334 6.334 5 C 0.031 3.969 6 H 0.123 0.877 7 C -0.174 4.174 8 C -0.010 4.010 9 N -0.389 5.389 10 C 0.383 3.617 11 O -0.427 6.427 12 C -0.573 4.573 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 H 0.112 0.888 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.980 -9.742 5.104 11.041 hybrid contribution 0.301 0.750 0.008 0.808 sum 1.280 -8.992 5.112 10.422 Atomic orbital electron populations 1.23112 0.77509 1.02665 1.02377 1.86477 1.22574 1.34534 1.85371 1.24061 0.92238 0.81381 0.74260 1.90815 1.66027 1.35670 1.40892 1.22020 0.86458 0.89653 0.98807 0.87658 1.23561 0.98888 0.99777 0.95157 1.22728 0.92048 0.94250 0.92018 1.50592 1.32318 1.05393 1.50623 1.18166 0.84012 0.80304 0.79178 1.90655 1.30380 1.83553 1.38142 1.20749 1.20445 0.93214 1.22885 0.91351 1.25718 0.94387 0.99373 0.93841 1.70037 1.22843 1.27366 1.19437 0.86317 0.80162 0.80687 0.79337 1.19790 1.20445 1.18857 0.88758 0.92436 0.92191 0.89418 0.89932 0.90561 0.91081 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 15 2 O -0.37 -6.41 10.57 -39.24 -0.41 -6.82 15 3 C 0.44 9.40 7.43 36.01 0.27 9.67 15 4 O -0.45 -12.00 14.10 -25.91 -0.37 -12.36 15 5 C 0.14 2.64 4.78 -68.01 -0.32 2.32 15 6 H 0.11 1.77 8.14 -51.93 -0.42 1.35 15 7 C -0.14 -1.98 7.85 -25.79 -0.20 -2.18 15 8 C 0.11 1.93 8.48 -2.85 -0.02 1.91 15 9 N -0.64 -15.33 3.41 -173.13 -0.59 -15.92 15 10 C 0.58 17.40 7.52 -12.99 -0.10 17.30 15 11 O -0.55 -18.85 13.72 -16.24 -0.22 -19.08 15 12 C -0.54 -15.73 9.32 -35.63 -0.33 -16.07 15 13 H 0.07 1.83 7.70 -52.48 -0.40 1.43 15 14 C 0.09 2.49 5.49 -17.37 -0.10 2.39 15 15 N -0.77 -23.90 11.85 55.55 0.66 -23.25 15 16 Si 0.91 20.64 29.56 -169.99 -5.03 15.62 15 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 15 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.06 0.80 8.13 -51.93 -0.42 0.38 15 22 H 0.06 0.90 8.13 -51.93 -0.42 0.48 15 23 H 0.09 1.29 8.09 -51.93 -0.42 0.87 15 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 26 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 27 H 0.27 7.55 8.29 -40.82 -0.34 7.21 15 LS Contribution 247.02 15.07 3.72 3.72 Total: -1.00 -38.89 247.02 -4.90 -43.79 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -2.92 Total: -2.63 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 0.26 Total: 16.94 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.07 Total: -39.17 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.00 Total: -38.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -38.89 -4.90 -43.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888064254.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.519 kcal (2) G-P(sol) polarization free energy of solvation -38.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds