Wall clock time and date at job start Sun Mar 29 2020 21:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00208 * 2 1 4 4 O 1.20831 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00293 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.96434 * 49.66540 * 5 3 2 7 7 C 1.53953 * 113.76657 * 277.98744 * 5 3 2 8 8 C 1.53946 * 86.28831 * 222.09198 * 7 5 3 9 9 N 1.47585 * 113.76902 * 181.35044 * 5 3 2 10 10 C 1.34780 * 134.49071 * 318.92086 * 9 5 3 11 11 O 1.21689 * 119.99993 * 0.02562 * 10 9 5 12 12 C 1.46366 * 119.99725 * 180.02562 * 10 9 5 13 13 H 1.08006 * 120.00361 * 353.93363 * 12 10 9 14 14 C 1.40049 * 119.99801 * 173.92534 * 12 10 9 15 15 N 1.30670 * 120.00281 * 6.15240 * 14 12 10 16 16 Si 1.86808 * 120.00108 * 186.15235 * 14 12 10 17 17 H 1.48501 * 109.47168 * 94.98368 * 16 14 12 18 18 H 1.48498 * 109.47078 * 214.98244 * 16 14 12 19 19 H 1.48496 * 109.46758 * 334.98529 * 16 14 12 20 20 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46950 * 299.99641 * 1 2 3 22 22 H 1.09002 * 109.47244 * 59.99864 * 1 2 3 23 23 H 1.09000 * 113.74026 * 336.43776 * 7 5 3 24 24 H 1.09001 * 113.73637 * 107.63989 * 7 5 3 25 25 H 1.09000 * 113.76764 * 137.91079 * 8 7 5 26 26 H 1.09000 * 113.76624 * 269.19201 * 8 7 5 27 27 H 0.96997 * 120.00737 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0248 0.6485 -0.7659 7 6 4.1968 1.1115 1.3944 8 6 5.1410 2.2589 0.9921 9 7 4.0897 2.6544 0.0313 10 6 3.7460 3.8092 -0.5727 11 8 2.8026 3.8368 -1.3408 12 6 4.5074 5.0301 -0.3046 13 1 5.2810 5.0296 0.4491 14 6 4.2329 6.1990 -1.0255 15 7 3.2202 6.2353 -1.8505 16 14 5.3146 7.7064 -0.8078 17 1 6.3587 7.7231 -1.8637 18 1 4.4830 8.9320 -0.9146 19 1 5.9620 7.6623 0.5279 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 3.5228 1.3643 2.2129 24 1 4.7011 0.1560 1.5389 25 1 5.3097 2.9875 1.7850 26 1 6.0641 1.9230 0.5197 27 1 3.0303 7.0447 -2.3501 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888064254.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:26 Heat of formation + Delta-G solvation = -107.840137 kcal Electronic energy + Delta-G solvation = -14387.423816 eV Core-core repulsion = 11725.049740 eV Total energy + Delta-G solvation = -2662.374076 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.75539 -39.96805 -37.70401 -37.28835 -34.62105 -30.79060 -29.36976 -28.06595 -27.17965 -23.09457 -22.73721 -20.40344 -19.00999 -18.64443 -17.82200 -17.56763 -17.00592 -16.17186 -15.66019 -15.41213 -14.42763 -14.24658 -14.08626 -13.80873 -13.26058 -13.05656 -12.93886 -12.81254 -12.62661 -12.42630 -12.08833 -11.99506 -11.78508 -11.25749 -10.94244 -9.74513 -9.20529 -8.29569 -6.85511 1.21106 1.37265 1.39870 1.55669 1.70273 2.20324 2.49334 2.59067 3.44388 3.60827 3.92967 4.13012 4.25940 4.31815 4.35038 4.56558 4.63333 4.78433 4.90597 5.06386 5.30442 5.34626 5.37501 5.95941 6.37034 6.84084 6.89069 7.57670 8.49498 8.69280 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.046787 B = 0.009238 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.311627 B = 3030.229431 C = 3512.761459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.442 3.558 4 O -0.518 6.518 5 C 0.121 3.879 6 H 0.135 0.865 7 C -0.102 4.102 8 C 0.110 3.890 9 N -0.671 5.671 10 C 0.557 3.443 11 O -0.611 6.611 12 C -0.566 4.566 13 H 0.087 0.913 14 C 0.025 3.975 15 N -0.828 5.828 16 Si 1.003 2.997 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.246 1.246 20 H 0.146 0.854 21 H 0.055 0.945 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.142 0.858 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -11.735 7.330 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.284 3.716 4 O -0.404 6.404 5 C 0.015 3.985 6 H 0.152 0.848 7 C -0.139 4.139 8 C -0.012 4.012 9 N -0.413 5.413 10 C 0.364 3.636 11 O -0.496 6.496 12 C -0.602 4.602 13 H 0.105 0.895 14 C -0.189 4.189 15 N -0.458 5.458 16 Si 0.822 3.178 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.169 1.169 20 H 0.164 0.836 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.160 0.840 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.182 -11.134 6.695 13.376 hybrid contribution -0.423 0.956 -0.436 1.132 sum 2.760 -10.178 6.259 12.263 Atomic orbital electron populations 1.23472 0.75589 1.05696 1.01548 1.86463 1.24374 1.32232 1.84382 1.24590 0.93253 0.81366 0.72396 1.90804 1.67481 1.37948 1.44189 1.22630 0.85526 0.87436 1.02869 0.84801 1.23461 0.97260 1.01515 0.91704 1.23167 0.92389 0.94918 0.90690 1.50400 1.34476 1.05877 1.50560 1.18494 0.83460 0.82640 0.79012 1.90590 1.32680 1.85501 1.40798 1.21313 1.21026 0.94111 1.23776 0.89487 1.27078 0.95694 1.03467 0.92698 1.70235 1.25569 1.28892 1.21095 0.84939 0.77667 0.74887 0.80321 1.18412 1.19950 1.16852 0.83635 0.92569 0.93909 0.89818 0.84023 0.90447 0.87798 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 15 2 O -0.36 -11.87 10.57 -51.36 -0.54 -12.41 15 3 C 0.44 18.87 7.43 71.24 0.53 19.40 15 4 O -0.52 -28.71 14.10 28.79 0.41 -28.30 15 5 C 0.12 4.47 4.78 44.35 0.21 4.68 15 6 H 0.13 4.15 8.14 -2.39 -0.02 4.13 15 7 C -0.10 -2.57 7.85 31.25 0.25 -2.32 15 8 C 0.11 3.43 8.48 86.44 0.73 4.16 15 9 N -0.67 -31.78 3.41 -819.88 -2.80 -34.58 15 10 C 0.56 34.78 7.52 86.36 0.65 35.43 15 11 O -0.61 -44.38 13.72 16.19 0.22 -44.16 15 12 C -0.57 -33.81 9.32 24.83 0.23 -33.58 15 13 H 0.09 4.64 7.70 -2.91 -0.02 4.62 15 14 C 0.02 1.44 5.49 85.31 0.47 1.91 15 15 N -0.83 -53.75 11.85 21.84 0.26 -53.49 15 16 Si 1.00 42.59 29.56 68.60 2.03 44.62 15 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 19 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 20 H 0.15 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.06 1.54 8.13 -2.39 -0.02 1.52 15 22 H 0.04 1.31 8.13 -2.39 -0.02 1.29 15 23 H 0.08 2.21 8.09 -2.39 -0.02 2.19 15 24 H 0.14 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 27 H 0.27 16.03 8.29 -92.71 -0.77 15.26 15 Total: -1.00 -92.41 247.02 5.02 -87.40 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.17 Total: 9.22 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 4.26 Total: 31.70 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.54 Total: -88.06 kcal Atomic # 8 Polarization: -84.95 SS G_CDS: 0.09 Total: -84.87 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -92.41 5.02 -87.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888064254.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.441 kcal (2) G-P(sol) polarization free energy of solvation -92.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds