Wall clock time and date at job start Sun Mar 29 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34226 * 117.00199 * 2 1 4 4 O 1.20827 * 120.00104 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00006 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.74119 * 311.24464 * 5 3 2 7 7 C 1.53503 * 113.46293 * 82.06209 * 5 3 2 8 8 C 1.53233 * 83.42887 * 140.67840 * 7 5 3 9 9 N 1.47062 * 88.08477 * 334.09975 * 8 7 5 10 10 C 1.34773 * 136.05962 * 207.20293 * 9 8 7 11 11 O 1.21689 * 120.00289 * 179.63273 * 10 9 8 12 12 C 1.46374 * 120.00177 * 359.63247 * 10 9 8 13 13 H 1.08001 * 119.99635 * 8.48477 * 12 10 9 14 14 C 1.40045 * 119.99911 * 188.48425 * 12 10 9 15 15 N 1.30679 * 119.99978 * 192.77619 * 14 12 10 16 16 Si 1.86800 * 120.00254 * 12.77935 * 14 12 10 17 17 H 1.48492 * 109.47187 * 269.99859 * 16 14 12 18 18 H 1.48501 * 109.47096 * 30.00261 * 16 14 12 19 19 H 1.48502 * 109.47025 * 149.99952 * 16 14 12 20 20 H 1.08999 * 109.47534 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47535 * 300.00204 * 1 2 3 22 22 H 1.08999 * 109.47145 * 60.00122 * 1 2 3 23 23 H 1.09007 * 114.20365 * 254.43259 * 7 5 3 24 24 H 1.08994 * 114.21205 * 27.06158 * 7 5 3 25 25 H 1.09003 * 113.38469 * 219.28832 * 8 7 5 26 26 H 1.09005 * 113.47617 * 88.92689 * 8 7 5 27 27 H 0.97000 * 119.99732 * 354.71831 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0215 0.6351 0.7568 7 6 4.1874 1.1123 -1.3938 8 6 5.1417 2.2061 -0.9031 9 7 4.0806 2.6525 0.0120 10 6 3.7302 3.8143 0.5985 11 8 2.7566 3.8587 1.3272 12 6 4.5207 5.0227 0.3590 13 1 5.2988 5.0193 -0.3900 14 6 4.2680 6.1832 1.1011 15 7 4.7878 7.3229 0.7288 16 14 3.1882 6.1020 2.6232 17 1 1.7733 6.3381 2.2394 18 1 3.3144 4.7611 3.2487 19 1 3.6186 7.1424 3.5915 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 4.6614 0.1451 -1.5619 24 1 3.5366 1.4211 -2.2117 25 1 5.3902 2.9395 -1.6703 26 1 6.0216 1.8169 -0.3907 27 1 5.4093 7.3524 -0.0153 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888064260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:29 Heat of formation + Delta-G solvation = -88.366220 kcal Electronic energy + Delta-G solvation = -14473.973819 eV Core-core repulsion = 11812.444195 eV Total energy + Delta-G solvation = -2661.529624 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.45671 -38.72351 -36.28685 -35.82771 -32.83577 -29.32855 -28.13589 -26.35106 -25.51794 -21.80119 -21.14040 -18.83307 -17.71146 -17.41273 -16.40263 -15.95575 -15.37522 -14.61846 -14.24233 -13.63857 -13.08908 -12.86349 -12.60635 -12.42031 -12.03346 -11.86193 -11.77676 -11.35583 -10.93902 -10.53902 -10.46217 -10.01726 -9.75463 -9.21640 -8.87020 -7.90692 -7.69090 -6.98439 -4.87690 2.65372 2.96712 3.61362 3.63464 3.88263 4.15022 4.35465 4.53962 4.58570 5.08657 5.19407 5.27284 5.33922 5.40476 5.62461 5.64422 5.68505 5.75734 5.98070 6.23778 6.41767 6.72920 7.66761 7.78192 8.15152 8.30450 8.86366 9.15139 10.11700 10.35132 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.038048 B = 0.011052 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.730854 B = 2532.777798 C = 3100.803482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.441 3.559 4 O -0.455 6.455 5 C 0.138 3.862 6 H 0.110 0.890 7 C -0.139 4.139 8 C 0.113 3.887 9 N -0.640 5.640 10 C 0.581 3.419 11 O -0.587 6.587 12 C -0.591 4.591 13 H 0.070 0.930 14 C 0.065 3.935 15 N -0.833 5.833 16 Si 1.118 2.882 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.319 1.319 20 H 0.095 0.905 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -14.469 -3.809 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.288 6.288 3 C 0.280 3.720 4 O -0.337 6.337 5 C 0.031 3.969 6 H 0.128 0.872 7 C -0.177 4.177 8 C -0.011 4.011 9 N -0.380 5.380 10 C 0.392 3.608 11 O -0.476 6.476 12 C -0.627 4.627 13 H 0.088 0.912 14 C -0.152 4.152 15 N -0.461 5.461 16 Si 0.950 3.050 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.250 1.250 20 H 0.114 0.886 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.522 -12.937 -2.225 13.367 hybrid contribution 0.648 -0.947 -1.438 1.840 sum -1.874 -13.884 -3.663 14.481 Atomic orbital electron populations 1.23134 0.77300 1.02830 1.02422 1.86478 1.22735 1.34327 1.85218 1.24089 0.92257 0.81483 0.74212 1.90805 1.66051 1.35726 1.41120 1.22100 0.86665 0.89144 0.99019 0.87216 1.23440 0.98962 1.00323 0.95013 1.22503 0.91867 0.94496 0.92213 1.49669 1.29787 1.05538 1.53045 1.18187 0.84399 0.80425 0.77752 1.90288 1.31369 1.83271 1.42685 1.21885 1.21345 0.95384 1.24084 0.91168 1.27060 0.96542 0.90058 1.01572 1.70633 1.23439 1.25896 1.26096 0.82649 0.75138 0.74085 0.73146 1.21305 1.20320 1.24971 0.88628 0.92140 0.92354 0.89094 0.88975 0.90642 0.90700 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 15 2 O -0.37 -5.94 10.56 -39.25 -0.41 -6.35 15 3 C 0.44 8.75 7.43 36.01 0.27 9.02 15 4 O -0.46 -11.30 14.02 -25.99 -0.36 -11.67 15 5 C 0.14 2.46 4.58 -73.55 -0.34 2.12 15 6 H 0.11 1.67 8.14 -51.93 -0.42 1.24 15 7 C -0.14 -1.89 8.00 -26.35 -0.21 -2.10 15 8 C 0.11 1.85 8.31 -8.65 -0.07 1.78 15 9 N -0.64 -14.53 3.48 -180.65 -0.63 -15.16 15 10 C 0.58 16.57 7.31 -12.99 -0.09 16.48 15 11 O -0.59 -18.29 10.84 -16.54 -0.18 -18.47 15 12 C -0.59 -17.40 9.76 -35.63 -0.35 -17.74 15 13 H 0.07 2.02 7.99 -52.49 -0.42 1.60 15 14 C 0.07 1.95 5.52 -17.37 -0.10 1.85 15 15 N -0.83 -24.69 13.64 55.55 0.76 -23.93 15 16 Si 1.12 30.73 26.39 -169.99 -4.49 26.24 15 17 H -0.29 -8.03 7.11 56.52 0.40 -7.63 15 18 H -0.28 -7.80 6.45 56.52 0.36 -7.43 15 19 H -0.32 -8.25 7.11 56.52 0.40 -7.85 15 20 H 0.10 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.06 0.84 8.13 -51.93 -0.42 0.41 15 22 H 0.06 0.75 8.13 -51.93 -0.42 0.33 15 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.09 1.29 8.11 -51.93 -0.42 0.87 15 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.28 7.88 8.72 -40.82 -0.36 7.53 15 LS Contribution 242.87 15.07 3.66 3.66 Total: -1.00 -36.85 242.87 -4.47 -41.32 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -2.99 Total: -8.61 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 0.18 Total: 12.96 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.13 Total: -39.09 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.96 Total: -36.48 kcal Atomic # 14 Polarization: 30.73 SS G_CDS: -4.49 Total: 26.24 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -36.85 -4.47 -41.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888064260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.045 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds