Wall clock time and date at job start Sun Mar 29 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34226 * 117.00199 * 2 1 4 4 O 1.20827 * 120.00104 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00006 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.74119 * 311.24464 * 5 3 2 7 7 C 1.53503 * 113.46293 * 82.06209 * 5 3 2 8 8 C 1.53233 * 83.42887 * 140.67840 * 7 5 3 9 9 N 1.47062 * 88.08477 * 334.09975 * 8 7 5 10 10 C 1.34773 * 136.05962 * 207.20293 * 9 8 7 11 11 O 1.21689 * 120.00289 * 179.63273 * 10 9 8 12 12 C 1.46374 * 120.00177 * 359.63247 * 10 9 8 13 13 H 1.08001 * 119.99635 * 8.48477 * 12 10 9 14 14 C 1.40045 * 119.99911 * 188.48425 * 12 10 9 15 15 N 1.30679 * 119.99978 * 192.77619 * 14 12 10 16 16 Si 1.86800 * 120.00254 * 12.77935 * 14 12 10 17 17 H 1.48492 * 109.47187 * 269.99859 * 16 14 12 18 18 H 1.48501 * 109.47096 * 30.00261 * 16 14 12 19 19 H 1.48502 * 109.47025 * 149.99952 * 16 14 12 20 20 H 1.08999 * 109.47534 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47535 * 300.00204 * 1 2 3 22 22 H 1.08999 * 109.47145 * 60.00122 * 1 2 3 23 23 H 1.09007 * 114.20365 * 254.43259 * 7 5 3 24 24 H 1.08994 * 114.21205 * 27.06158 * 7 5 3 25 25 H 1.09003 * 113.38469 * 219.28832 * 8 7 5 26 26 H 1.09005 * 113.47617 * 88.92689 * 8 7 5 27 27 H 0.97000 * 119.99732 * 354.71831 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0215 0.6351 0.7568 7 6 4.1874 1.1123 -1.3938 8 6 5.1417 2.2061 -0.9031 9 7 4.0806 2.6525 0.0120 10 6 3.7302 3.8143 0.5985 11 8 2.7566 3.8587 1.3272 12 6 4.5207 5.0227 0.3590 13 1 5.2988 5.0193 -0.3900 14 6 4.2680 6.1832 1.1011 15 7 4.7878 7.3229 0.7288 16 14 3.1882 6.1020 2.6232 17 1 1.7733 6.3381 2.2394 18 1 3.3144 4.7611 3.2487 19 1 3.6186 7.1424 3.5915 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 4.6614 0.1451 -1.5619 24 1 3.5366 1.4211 -2.2117 25 1 5.3902 2.9395 -1.6703 26 1 6.0216 1.8169 -0.3907 27 1 5.4093 7.3524 -0.0153 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888064260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:29 Heat of formation + Delta-G solvation = -115.940748 kcal Electronic energy + Delta-G solvation = -14475.169540 eV Core-core repulsion = 11812.444195 eV Total energy + Delta-G solvation = -2662.725345 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.95431 -40.26034 -38.29845 -37.33641 -35.09693 -31.04727 -29.44923 -28.06335 -27.12891 -23.27629 -22.69334 -20.68374 -19.54850 -18.88471 -17.90251 -17.61032 -16.96336 -16.60510 -15.91392 -15.37659 -14.76888 -14.50728 -14.43047 -14.00587 -13.71958 -13.47875 -13.01424 -12.73499 -12.66153 -12.39351 -12.07459 -11.79732 -11.43420 -11.24419 -11.12611 -10.06321 -9.47385 -9.24325 -7.13746 1.16039 1.38576 1.45066 1.65785 1.87367 2.13856 2.28430 2.52513 3.27255 3.28557 3.85280 3.99114 4.22394 4.28289 4.31194 4.45269 4.60528 4.66070 4.77334 4.91046 5.23006 5.33573 5.47960 5.60944 6.01265 6.60828 6.79580 7.24235 7.99907 8.07990 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.038048 B = 0.011052 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.730854 B = 2532.777798 C = 3100.803482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.441 3.559 4 O -0.517 6.517 5 C 0.126 3.874 6 H 0.146 0.854 7 C -0.104 4.104 8 C 0.106 3.894 9 N -0.666 5.666 10 C 0.575 3.425 11 O -0.624 6.624 12 C -0.610 4.610 13 H 0.066 0.934 14 C 0.034 3.966 15 N -0.847 5.847 16 Si 1.152 2.848 17 H -0.301 1.301 18 H -0.292 1.292 19 H -0.294 1.294 20 H 0.144 0.856 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.151 0.849 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -17.139 -4.381 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.283 3.717 4 O -0.403 6.403 5 C 0.020 3.980 6 H 0.163 0.837 7 C -0.142 4.142 8 C -0.016 4.016 9 N -0.404 5.404 10 C 0.383 3.617 11 O -0.516 6.516 12 C -0.646 4.646 13 H 0.085 0.915 14 C -0.181 4.181 15 N -0.476 5.476 16 Si 0.982 3.018 17 H -0.229 1.229 18 H -0.219 1.219 19 H -0.224 1.224 20 H 0.162 0.838 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.169 0.831 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.796 -15.666 -2.835 16.021 hybrid contribution 0.412 -0.307 -1.339 1.434 sum -1.384 -15.973 -4.174 16.567 Atomic orbital electron populations 1.23482 0.75450 1.05710 1.01689 1.86467 1.24453 1.32120 1.84241 1.24571 0.93193 0.81496 0.72474 1.90795 1.67426 1.37861 1.44254 1.22727 0.85807 0.86509 1.02928 0.83695 1.23387 0.96928 1.01999 0.91872 1.22947 0.92336 0.95048 0.91238 1.49530 1.32046 1.06204 1.52579 1.18007 0.83671 0.82244 0.77738 1.90248 1.32552 1.84647 1.44121 1.22046 1.21683 0.96640 1.24250 0.91538 1.27673 0.97164 0.90387 1.02860 1.70636 1.24247 1.26013 1.26681 0.82202 0.73526 0.73749 0.72309 1.22935 1.21935 1.22393 0.83824 0.93568 0.92566 0.83103 0.89617 0.91392 0.87312 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 15 2 O -0.36 -10.51 10.56 -51.38 -0.54 -11.05 15 3 C 0.44 16.87 7.43 71.24 0.53 17.40 15 4 O -0.52 -25.95 14.02 28.88 0.40 -25.55 15 5 C 0.13 4.11 4.58 41.05 0.19 4.30 15 6 H 0.15 3.76 8.14 -2.39 -0.02 3.74 15 7 C -0.10 -2.34 8.00 30.84 0.25 -2.10 15 8 C 0.11 3.14 8.31 83.09 0.69 3.83 15 9 N -0.67 -29.32 3.48 -843.68 -2.93 -32.26 15 10 C 0.57 33.07 7.31 86.36 0.63 33.70 15 11 O -0.62 -39.63 10.84 16.47 0.18 -39.45 15 12 C -0.61 -36.42 9.76 24.83 0.24 -36.18 15 13 H 0.07 3.89 7.99 -2.91 -0.02 3.87 15 14 C 0.03 2.04 5.52 85.30 0.47 2.51 15 15 N -0.85 -50.66 13.64 21.84 0.30 -50.36 15 16 Si 1.15 63.61 26.39 68.60 1.81 65.42 15 17 H -0.30 -17.22 7.11 99.48 0.71 -16.51 15 18 H -0.29 -16.68 6.45 99.48 0.64 -16.04 15 19 H -0.29 -14.80 7.11 99.48 0.71 -14.09 15 20 H 0.14 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.05 1.24 8.13 -2.39 -0.02 1.22 15 22 H 0.06 1.38 8.13 -2.39 -0.02 1.36 15 23 H 0.15 1.73 8.14 -2.38 -0.02 1.72 15 24 H 0.09 2.09 8.11 -2.39 -0.02 2.07 15 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.11 2.53 8.14 -2.38 -0.02 2.51 15 27 H 0.28 16.01 8.72 -92.71 -0.81 15.21 15 Total: -1.00 -83.24 242.87 4.48 -78.76 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: 1.07 Total: -10.87 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 4.20 Total: 25.37 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -2.64 Total: -82.62 kcal Atomic # 8 Polarization: -76.09 SS G_CDS: 0.04 Total: -76.05 kcal Atomic # 14 Polarization: 63.61 SS G_CDS: 1.81 Total: 65.42 kcal Total: -83.24 4.48 -78.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888064260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.181 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds