Wall clock time and date at job start Sun Mar 29 2020 22:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.47062 * 136.05762 * 359.97438 * 13 11 10 15 15 C 1.53500 * 87.98589 * 152.84499 * 14 13 11 16 16 C 1.47061 * 136.05697 * 179.63048 * 13 11 10 17 17 H 1.09006 * 113.46918 * 92.37780 * 16 13 11 18 18 C 1.53005 * 113.47136 * 321.93509 * 16 13 11 19 19 O 1.42897 * 109.46677 * 295.00263 * 18 16 13 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 24 24 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 25 25 H 1.08999 * 113.47170 * 267.62945 * 14 13 11 26 26 H 1.09002 * 113.46682 * 38.00654 * 14 13 11 27 27 H 1.08993 * 114.20369 * 139.65560 * 15 14 13 28 28 H 1.09000 * 114.20322 * 272.48146 * 15 14 13 29 29 H 1.09003 * 109.46698 * 54.99769 * 18 16 13 30 30 H 1.08993 * 109.47378 * 174.99712 * 18 16 13 31 31 H 0.96704 * 114.00143 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 3.5789 -6.5413 -0.0018 15 6 3.1502 -7.8378 0.6992 16 6 1.8113 -7.5617 0.0066 17 1 1.7406 -7.9963 -0.9905 18 6 0.5975 -7.8840 0.8807 19 8 0.9099 -7.6122 2.2483 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8719 -3.6044 -0.8906 24 1 2.8719 -3.6044 0.8894 25 1 3.9835 -6.7014 -1.0011 26 1 4.2146 -5.9041 0.6130 27 1 3.6647 -8.7299 0.3422 28 1 3.1108 -7.7662 1.7862 29 1 -0.2468 -7.2678 0.5714 30 1 0.3389 -8.9369 0.7693 31 1 0.1842 -7.7937 2.8612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889152341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:31 Heat of formation + Delta-G solvation = -57.551531 kcal Electronic energy + Delta-G solvation = -14223.430579 eV Core-core repulsion = 11699.070275 eV Total energy + Delta-G solvation = -2524.360304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23011 -37.52980 -36.08604 -33.40114 -31.12702 -29.44721 -28.44989 -25.52490 -23.06035 -22.35713 -20.46989 -18.49398 -17.33487 -16.67587 -15.82850 -15.69191 -15.46079 -14.42458 -14.26451 -13.99504 -13.05872 -12.59934 -12.56574 -12.18859 -12.12650 -11.98257 -11.40971 -11.08941 -10.90008 -10.56788 -10.34336 -10.05358 -9.90389 -9.59561 -9.09636 -8.85620 -8.37499 -8.27252 -5.93013 -3.97167 3.15497 3.34164 3.35664 3.41323 3.44432 4.17640 4.48006 4.49869 4.95046 5.04074 5.16013 5.31050 5.41699 5.41778 5.49922 5.57292 5.75711 5.84667 6.19632 6.28405 6.34100 6.44310 6.97034 7.65972 7.78011 7.90825 8.10361 8.17571 8.42762 8.84840 9.11399 9.65995 11.18085 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055301 B = 0.006347 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.196176 B = 4410.800331 C = 4682.194605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.122 4.122 11 C 0.543 3.457 12 O -0.536 6.536 13 N -0.647 5.647 14 C 0.099 3.901 15 C -0.144 4.144 16 C 0.124 3.876 17 H 0.097 0.903 18 C 0.068 3.932 19 O -0.564 6.564 20 H 0.261 0.739 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -17.072 1.034 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.161 4.161 11 C 0.335 3.665 12 O -0.411 6.411 13 N -0.385 5.385 14 C -0.024 4.024 15 C -0.182 4.182 16 C 0.020 3.980 17 H 0.115 0.885 18 C -0.010 4.010 19 O -0.369 6.369 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.975 -16.528 0.754 17.590 hybrid contribution -0.091 0.735 0.093 0.746 sum 5.883 -15.793 0.847 16.874 Atomic orbital electron populations 1.70006 1.06068 1.26538 1.50320 1.25031 0.94830 0.99223 0.95330 0.86579 0.79759 0.83468 0.78068 1.20656 1.19887 1.21221 1.21229 0.92937 0.91012 1.51247 0.92618 1.18906 0.93184 0.89339 0.98562 1.21806 1.00625 0.91437 1.02269 1.21177 0.87851 0.83685 0.73788 1.90635 1.14260 1.86715 1.49511 1.49910 1.08582 1.04490 1.75566 1.22851 0.84825 0.94572 1.00166 1.23355 0.95267 0.97355 1.02231 1.22644 0.95035 0.82473 0.97803 0.88533 1.22228 0.97676 0.98579 0.82534 1.86447 1.42818 1.90832 1.16827 0.92977 0.95826 0.95882 0.90523 0.90426 0.90282 0.90359 0.90113 0.87603 0.91714 0.93262 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.07 13.29 55.43 0.74 -27.33 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.53 -15.43 9.11 -34.44 -0.31 -15.75 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.06 4.26 -27.89 -0.12 0.94 16 10 C -0.12 -2.70 5.47 -27.89 -0.15 -2.85 16 11 C 0.54 11.64 7.98 -10.98 -0.09 11.55 16 12 O -0.54 -13.50 15.44 5.56 0.09 -13.41 16 13 N -0.65 -10.61 3.57 -177.62 -0.63 -11.24 16 14 C 0.10 1.16 8.42 -8.52 -0.07 1.09 16 15 C -0.14 -1.48 7.84 -26.34 -0.21 -1.69 16 16 C 0.12 1.58 4.58 -72.53 -0.33 1.25 16 17 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.07 0.88 7.05 37.16 0.26 1.14 16 19 O -0.56 -7.52 12.09 -35.23 -0.43 -7.95 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 21 H 0.02 0.72 8.10 -51.92 -0.42 0.30 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 24 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.11 1.24 6.89 -51.93 -0.36 0.88 16 29 H 0.06 1.03 7.05 -51.93 -0.37 0.66 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.38 3.47 9.12 45.56 0.42 3.89 16 LS Contribution 267.70 15.07 4.03 4.03 Total: -1.00 -36.24 267.70 -5.99 -42.24 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.65 Total: -0.72 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.12 Total: -2.70 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.10 Total: -38.57 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.34 Total: -21.36 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -36.24 -5.99 -42.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889152341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.315 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds