Wall clock time and date at job start Sun Mar 29 2020 22:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.47062 * 136.05762 * 359.97438 * 13 11 10 15 15 C 1.53500 * 87.98589 * 152.84499 * 14 13 11 16 16 C 1.47061 * 136.05697 * 179.63048 * 13 11 10 17 17 H 1.09006 * 113.46918 * 92.37780 * 16 13 11 18 18 C 1.53005 * 113.47136 * 321.93509 * 16 13 11 19 19 O 1.42897 * 109.46677 * 295.00263 * 18 16 13 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 24 24 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 25 25 H 1.08999 * 113.47170 * 267.62945 * 14 13 11 26 26 H 1.09002 * 113.46682 * 38.00654 * 14 13 11 27 27 H 1.08993 * 114.20369 * 139.65560 * 15 14 13 28 28 H 1.09000 * 114.20322 * 272.48146 * 15 14 13 29 29 H 1.09003 * 109.46698 * 54.99769 * 18 16 13 30 30 H 1.08993 * 109.47378 * 174.99712 * 18 16 13 31 31 H 0.96704 * 114.00143 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 3.5789 -6.5413 -0.0018 15 6 3.1502 -7.8378 0.6992 16 6 1.8113 -7.5617 0.0066 17 1 1.7406 -7.9963 -0.9905 18 6 0.5975 -7.8840 0.8807 19 8 0.9099 -7.6122 2.2483 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8719 -3.6044 -0.8906 24 1 2.8719 -3.6044 0.8894 25 1 3.9835 -6.7014 -1.0011 26 1 4.2146 -5.9041 0.6130 27 1 3.6647 -8.7299 0.3422 28 1 3.1108 -7.7662 1.7862 29 1 -0.2468 -7.2678 0.5714 30 1 0.3389 -8.9369 0.7693 31 1 0.1842 -7.7937 2.8612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889152341.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:31 Heat of formation + Delta-G solvation = -86.517212 kcal Electronic energy + Delta-G solvation = -14224.686625 eV Core-core repulsion = 11699.070275 eV Total energy + Delta-G solvation = -2525.616350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44244 -39.05914 -37.13069 -35.59146 -33.13274 -30.90672 -29.44977 -27.55431 -24.16753 -23.94462 -22.06205 -19.76815 -18.86623 -18.22905 -17.42412 -16.95820 -16.79744 -16.45249 -15.79865 -15.34860 -14.42816 -14.26901 -13.89109 -13.79633 -13.42832 -13.24921 -13.04433 -12.82915 -12.48713 -12.29924 -11.97895 -11.67405 -11.37832 -11.27431 -11.12250 -10.59744 -10.46036 -9.63400 -8.20579 -6.35593 1.40295 1.44009 1.55028 1.71601 1.91619 2.41528 3.11913 3.25947 3.57886 3.78345 4.09169 4.09609 4.37123 4.42247 4.43107 4.49988 4.59161 4.71095 4.76133 4.94401 5.03777 5.20054 5.44999 5.48933 5.57653 5.80739 6.14130 6.76075 6.82039 6.85863 7.27698 7.35085 8.92452 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055301 B = 0.006347 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.196176 B = 4410.800331 C = 4682.194605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.255 1.255 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.046 3.954 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.593 6.593 13 N -0.653 5.653 14 C 0.093 3.907 15 C -0.120 4.120 16 C 0.110 3.890 17 H 0.125 0.875 18 C 0.066 3.934 19 O -0.582 6.582 20 H 0.264 0.736 21 H -0.021 1.021 22 H -0.018 1.018 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.024 0.976 30 H 0.089 0.911 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.328 -18.161 0.771 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.801 3.199 4 H -0.196 1.196 5 H -0.178 1.178 6 H -0.209 1.209 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.149 4.149 11 C 0.327 3.673 12 O -0.473 6.473 13 N -0.389 5.389 14 C -0.028 4.028 15 C -0.158 4.158 16 C 0.008 3.992 17 H 0.142 0.858 18 C -0.012 4.012 19 O -0.389 6.389 20 H 0.073 0.927 21 H -0.002 1.002 22 H 0.000 1.000 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 9.011 -17.685 0.501 19.854 hybrid contribution -1.021 0.946 0.191 1.405 sum 7.989 -16.738 0.693 18.560 Atomic orbital electron populations 1.70189 1.08403 1.27932 1.51302 1.26190 0.95777 1.04095 0.94410 0.85259 0.78629 0.77349 0.78622 1.19579 1.17842 1.20908 1.21695 0.93945 0.91579 1.51153 0.90719 1.18662 0.93578 0.92425 0.94512 1.21529 0.99227 0.90246 1.03941 1.20859 0.87125 0.85124 0.74202 1.90606 1.16423 1.87762 1.52553 1.49948 1.11343 1.04709 1.72878 1.23298 0.82210 0.94942 1.02365 1.23242 0.93188 0.98276 1.01077 1.23191 0.96478 0.79867 0.99674 0.85769 1.22273 0.96555 1.00018 0.82351 1.86400 1.43963 1.91208 1.17372 0.92742 1.00235 0.99954 0.88374 0.88887 0.87095 0.89962 0.85647 0.89088 0.95794 0.89310 0.75965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.19 13.29 21.45 0.28 -60.91 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.55 -32.50 9.11 25.60 0.23 -32.27 16 8 H 0.07 4.06 7.74 -2.91 -0.02 4.04 16 9 C 0.05 2.72 4.26 29.85 0.13 2.85 16 10 C -0.11 -4.94 5.47 29.85 0.16 -4.77 16 11 C 0.54 23.53 7.98 87.65 0.70 24.22 16 12 O -0.59 -31.76 15.44 -3.04 -0.05 -31.81 16 13 N -0.65 -20.57 3.57 -834.25 -2.98 -23.55 16 14 C 0.09 1.84 8.42 83.17 0.70 2.54 16 15 C -0.12 -1.98 7.84 30.85 0.24 -1.74 16 16 C 0.11 2.53 4.58 41.71 0.19 2.73 16 17 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 18 C 0.07 1.64 7.05 71.98 0.51 2.15 16 19 O -0.58 -15.13 12.09 -148.98 -1.80 -16.93 16 20 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 21 H -0.02 -1.39 8.10 -2.38 -0.02 -1.41 16 22 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 23 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 24 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 25 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.84 6.89 -2.39 -0.02 1.83 16 29 H 0.02 0.79 7.05 -2.39 -0.02 0.77 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.39 7.13 9.12 -74.05 -0.68 6.46 16 Total: -1.00 -83.86 267.70 1.26 -82.60 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.44 Total: 7.46 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 3.33 Total: -4.27 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.69 Total: -84.45 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -1.85 Total: -48.74 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -83.86 1.26 -82.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889152341.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.912 kcal (2) G-P(sol) polarization free energy of solvation -83.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds