Wall clock time and date at job start Sun Mar 29 2020 21:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47142 * 274.98300 * 3 2 1 5 5 H 1.48497 * 109.47172 * 34.98546 * 3 2 1 6 6 H 1.48501 * 109.47262 * 154.98301 * 3 2 1 7 7 C 1.40050 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00149 * 186.14844 * 7 2 1 9 9 C 1.46376 * 119.99743 * 6.15320 * 7 2 1 10 10 O 1.21684 * 119.99936 * 353.93392 * 9 7 2 11 11 N 1.34779 * 119.99808 * 173.93620 * 9 7 2 12 12 C 1.46499 * 119.99690 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47018 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47114 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46858 * 304.99755 * 14 13 12 16 16 O 1.42895 * 109.47296 * 65.00237 * 14 13 12 17 17 C 1.52997 * 109.46765 * 185.00117 * 14 13 12 18 18 C 1.53007 * 117.49902 * 248.74326 * 17 14 13 19 19 C 1.53007 * 117.49647 * 180.08618 * 17 14 13 20 20 H 0.96999 * 120.00031 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00265 * 0.02562 * 11 9 7 22 22 H 1.09000 * 109.47087 * 60.00631 * 12 11 9 23 23 H 1.08998 * 109.47323 * 300.00034 * 12 11 9 24 24 H 1.08997 * 109.47042 * 59.99891 * 13 12 11 25 25 H 1.08998 * 109.47011 * 300.00115 * 13 12 11 26 26 H 0.96697 * 114.00379 * 59.99804 * 16 14 13 27 27 H 1.08994 * 115.55628 * 34.41925 * 17 14 13 28 28 H 1.08998 * 117.49518 * 0.02562 * 18 17 14 29 29 H 1.08996 * 117.50124 * 145.02042 * 18 17 14 30 30 H 1.08999 * 117.49829 * 214.98005 * 19 17 14 31 31 H 1.08996 * 117.49731 * 359.97251 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0822 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1367 11 7 1.9611 -3.6343 -0.2572 12 6 1.2349 -4.8994 -0.3921 13 6 2.2349 -6.0511 -0.5130 14 6 1.4765 -7.3724 -0.6545 15 1 0.7833 -7.4844 0.1792 16 8 0.7477 -7.3740 -1.8836 17 6 2.4716 -8.5345 -0.6501 18 6 2.6569 -9.3109 -1.9555 19 6 1.9056 -9.9497 -0.7846 20 1 -0.4850 0.8400 0.0004 21 1 2.9311 -3.6296 -0.2553 22 1 0.6092 -4.8659 -1.2840 23 1 0.6079 -5.0539 0.4861 24 1 2.8603 -6.0844 0.3791 25 1 2.8623 -5.8969 -1.3909 26 1 1.3022 -7.2778 -2.6699 27 1 3.3475 -8.4011 -0.0153 28 1 2.0701 -8.9934 -2.8174 29 1 3.6546 -9.6885 -2.1793 30 1 2.4095 -10.7472 -0.2386 31 1 0.8244 -10.0527 -0.8758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890721155.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:18 Heat of formation + Delta-G solvation = -78.957398 kcal Electronic energy + Delta-G solvation = -13829.820086 eV Core-core repulsion = 11304.531554 eV Total energy + Delta-G solvation = -2525.288532 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.02413 -37.18611 -35.21099 -33.69701 -32.34079 -30.48018 -26.81804 -25.08454 -22.65467 -21.52737 -20.60964 -19.53495 -17.24089 -16.71081 -15.97893 -15.41200 -15.10585 -14.59964 -13.96079 -13.66554 -13.49449 -12.58973 -12.30387 -12.01987 -11.71114 -11.56975 -11.10383 -11.07638 -10.86558 -10.65489 -10.55521 -10.42087 -10.23065 -10.18275 -9.78498 -8.81499 -7.55994 -7.43422 -6.15514 -4.59861 3.15979 3.22797 3.26484 3.60188 4.11982 4.28878 4.55807 4.63449 4.75714 4.81413 5.02505 5.11316 5.31084 5.47647 5.56006 5.63603 5.80115 5.83903 5.93108 5.97658 6.04084 6.09698 6.64482 6.72598 7.47009 7.67300 7.98121 8.15936 8.37553 9.06149 9.59278 10.64434 10.83441 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.083164 B = 0.005125 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.603246 B = 5462.617976 C = 5638.440497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.581 6.581 11 N -0.770 5.770 12 C 0.136 3.864 13 C -0.156 4.156 14 C 0.139 3.861 15 H 0.104 0.896 16 O -0.556 6.556 17 C -0.189 4.189 18 C -0.180 4.180 19 C -0.173 4.173 20 H 0.268 0.732 21 H 0.378 0.622 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.372 0.628 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -14.227 -2.275 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.011 3.989 13 C -0.194 4.194 14 C 0.079 3.921 15 H 0.121 0.879 16 O -0.362 6.362 17 C -0.207 4.207 18 C -0.216 4.216 19 C -0.210 4.210 20 H 0.079 0.921 21 H 0.209 0.791 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.220 0.780 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.694 -14.196 -1.865 15.409 hybrid contribution 1.553 0.810 -0.295 1.776 sum 7.247 -13.386 -2.159 15.375 Atomic orbital electron populations 1.70031 1.07092 1.27198 1.35407 1.25708 0.94580 1.00275 0.92636 0.86368 0.80208 0.81560 0.78642 1.19827 1.20466 1.18928 1.20897 0.94057 0.89677 1.53874 0.91454 1.18233 0.87172 0.82476 0.76426 1.90598 1.14127 1.86500 1.55155 1.46150 1.08453 1.05983 1.81961 1.20796 0.93811 0.83507 1.00812 1.22451 0.99136 0.95088 1.02720 1.21380 0.92152 0.91014 0.87523 0.87853 1.86614 1.38034 1.95952 1.15633 1.23206 1.02121 0.93596 1.01799 1.22946 1.01714 1.04302 0.92679 1.22915 1.00632 0.95305 1.02155 0.92147 0.79061 0.92787 0.93637 0.90890 0.91413 0.78014 0.87281 0.88244 0.89015 0.89121 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.58 11.85 55.55 0.66 -22.92 16 2 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 3 Si 0.91 20.41 29.56 -169.99 -5.03 15.39 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.84 9.54 -35.63 -0.34 -16.18 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.29 7.74 -12.99 -0.10 16.19 16 10 O -0.58 -19.55 15.04 5.20 0.08 -19.47 16 11 N -0.77 -17.72 5.55 -61.72 -0.34 -18.06 16 12 C 0.14 2.69 5.57 -4.04 -0.02 2.67 16 13 C -0.16 -2.15 4.99 -26.73 -0.13 -2.28 16 14 C 0.14 1.72 3.33 -26.73 -0.09 1.63 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 16 O -0.56 -7.39 12.03 -35.23 -0.42 -7.82 16 17 C -0.19 -1.89 5.71 -90.61 -0.52 -2.41 16 18 C -0.18 -1.59 9.74 -26.69 -0.26 -1.85 16 19 C -0.17 -1.62 10.19 -26.69 -0.27 -1.89 16 20 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 21 H 0.38 7.54 8.45 -40.82 -0.35 7.19 16 22 H 0.05 1.18 7.82 -51.93 -0.41 0.77 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.37 3.82 7.56 45.56 0.34 4.16 16 27 H 0.11 1.02 8.11 -51.93 -0.42 0.60 16 28 H 0.10 0.86 6.37 -51.93 -0.33 0.52 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 269.12 15.07 4.06 4.06 Total: -1.00 -35.45 269.12 -6.49 -41.95 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.66 Total: 8.60 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.83 Total: -1.72 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.32 Total: -40.98 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.35 Total: -27.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.45 -6.49 -41.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890721155.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.010 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds