Wall clock time and date at job start Sun Mar 29 2020 21:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47142 * 274.98300 * 3 2 1 5 5 H 1.48497 * 109.47172 * 34.98546 * 3 2 1 6 6 H 1.48501 * 109.47262 * 154.98301 * 3 2 1 7 7 C 1.40050 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00149 * 186.14844 * 7 2 1 9 9 C 1.46376 * 119.99743 * 6.15320 * 7 2 1 10 10 O 1.21684 * 119.99936 * 353.93392 * 9 7 2 11 11 N 1.34779 * 119.99808 * 173.93620 * 9 7 2 12 12 C 1.46499 * 119.99690 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47018 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47114 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46858 * 304.99755 * 14 13 12 16 16 O 1.42895 * 109.47296 * 65.00237 * 14 13 12 17 17 C 1.52997 * 109.46765 * 185.00117 * 14 13 12 18 18 C 1.53007 * 117.49902 * 248.74326 * 17 14 13 19 19 C 1.53007 * 117.49647 * 180.08618 * 17 14 13 20 20 H 0.96999 * 120.00031 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00265 * 0.02562 * 11 9 7 22 22 H 1.09000 * 109.47087 * 60.00631 * 12 11 9 23 23 H 1.08998 * 109.47323 * 300.00034 * 12 11 9 24 24 H 1.08997 * 109.47042 * 59.99891 * 13 12 11 25 25 H 1.08998 * 109.47011 * 300.00115 * 13 12 11 26 26 H 0.96697 * 114.00379 * 59.99804 * 16 14 13 27 27 H 1.08994 * 115.55628 * 34.41925 * 17 14 13 28 28 H 1.08998 * 117.49518 * 0.02562 * 18 17 14 29 29 H 1.08996 * 117.50124 * 145.02042 * 18 17 14 30 30 H 1.08999 * 117.49829 * 214.98005 * 19 17 14 31 31 H 1.08996 * 117.49731 * 359.97251 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0822 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1367 11 7 1.9611 -3.6343 -0.2572 12 6 1.2349 -4.8994 -0.3921 13 6 2.2349 -6.0511 -0.5130 14 6 1.4765 -7.3724 -0.6545 15 1 0.7833 -7.4844 0.1792 16 8 0.7477 -7.3740 -1.8836 17 6 2.4716 -8.5345 -0.6501 18 6 2.6569 -9.3109 -1.9555 19 6 1.9056 -9.9497 -0.7846 20 1 -0.4850 0.8400 0.0004 21 1 2.9311 -3.6296 -0.2553 22 1 0.6092 -4.8659 -1.2840 23 1 0.6079 -5.0539 0.4861 24 1 2.8603 -6.0844 0.3791 25 1 2.8623 -5.8969 -1.3909 26 1 1.3022 -7.2778 -2.6699 27 1 3.3475 -8.4011 -0.0153 28 1 2.0701 -8.9934 -2.8174 29 1 3.6546 -9.6885 -2.1793 30 1 2.4095 -10.7472 -0.2386 31 1 0.8244 -10.0527 -0.8758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890721155.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:18 Heat of formation + Delta-G solvation = -107.127577 kcal Electronic energy + Delta-G solvation = -13831.041636 eV Core-core repulsion = 11304.531554 eV Total energy + Delta-G solvation = -2526.510083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05938 -39.21547 -36.24974 -35.40987 -34.51916 -32.04825 -28.74491 -26.64160 -23.46881 -22.82709 -21.87617 -21.23320 -19.22899 -17.72172 -17.44585 -16.99573 -16.50868 -16.08188 -15.77671 -15.23482 -14.76461 -14.24373 -13.90762 -13.51503 -13.05958 -12.91566 -12.80486 -12.59566 -12.32818 -12.12752 -12.00251 -11.97533 -11.41249 -11.06142 -10.93775 -10.76567 -9.87138 -9.49217 -8.30357 -6.86360 1.40630 1.42266 1.58511 2.25096 2.46559 2.83936 3.06511 3.49794 3.60254 3.74564 3.97037 4.03807 4.14446 4.19885 4.47716 4.55270 4.71679 4.78599 4.82055 5.04826 5.15254 5.23562 5.27387 5.30241 5.31813 5.87217 6.24435 6.26745 6.80274 6.85922 7.55763 8.48601 8.66885 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.083164 B = 0.005125 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.603246 B = 5462.617976 C = 5638.440497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.532 3.468 10 O -0.637 6.637 11 N -0.755 5.755 12 C 0.137 3.863 13 C -0.137 4.137 14 C 0.141 3.859 15 H 0.090 0.910 16 O -0.575 6.575 17 C -0.191 4.191 18 C -0.172 4.172 19 C -0.176 4.176 20 H 0.275 0.725 21 H 0.397 0.603 22 H 0.028 0.972 23 H 0.023 0.977 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.384 0.616 27 H 0.122 0.878 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 -14.309 -2.485 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.612 4.612 8 H 0.108 0.892 9 C 0.336 3.664 10 O -0.524 6.524 11 N -0.410 5.410 12 C 0.013 3.987 13 C -0.175 4.175 14 C 0.082 3.918 15 H 0.108 0.892 16 O -0.383 6.383 17 C -0.210 4.210 18 C -0.208 4.208 19 C -0.213 4.213 20 H 0.085 0.915 21 H 0.230 0.770 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.234 0.766 27 H 0.140 0.860 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.416 -14.336 -2.084 16.754 hybrid contribution 0.685 0.760 -0.239 1.050 sum 9.101 -13.576 -2.324 16.509 Atomic orbital electron populations 1.70206 1.09738 1.29016 1.36432 1.27050 0.95511 1.05181 0.91109 0.84948 0.78903 0.74838 0.79196 1.18736 1.19774 1.16921 1.21461 0.95312 0.90208 1.54173 0.89150 1.18727 0.86827 0.84566 0.76250 1.90550 1.16462 1.87699 1.57728 1.45816 1.09336 1.05644 1.80215 1.20870 0.94971 0.84306 0.98572 1.22324 0.97771 0.93030 1.04369 1.21295 0.92315 0.91281 0.86935 0.89184 1.86589 1.39219 1.96017 1.16507 1.23054 1.01880 0.92758 1.03279 1.23051 1.02451 1.03176 0.92157 1.22970 1.00269 0.95246 1.02780 0.91539 0.76950 0.95322 0.95830 0.89083 0.89673 0.76563 0.85969 0.88202 0.87370 0.87595 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.76 11.85 21.84 0.26 -51.50 16 2 C 0.03 1.49 5.49 85.31 0.47 1.96 16 3 Si 1.00 41.30 29.56 68.60 2.03 43.33 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 7 C -0.58 -33.26 9.54 24.83 0.24 -33.02 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.53 32.09 7.74 86.36 0.67 32.76 16 10 O -0.64 -44.73 15.04 -4.30 -0.06 -44.79 16 11 N -0.76 -34.93 5.55 -467.40 -2.59 -37.52 16 12 C 0.14 5.55 5.57 86.38 0.48 6.03 16 13 C -0.14 -3.58 4.99 30.60 0.15 -3.42 16 14 C 0.14 3.35 3.33 30.59 0.10 3.46 16 15 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 16 O -0.58 -15.03 12.03 -148.98 -1.79 -16.82 16 17 C -0.19 -3.39 5.71 -10.79 -0.06 -3.45 16 18 C -0.17 -2.60 9.74 30.62 0.30 -2.30 16 19 C -0.18 -2.93 10.19 30.62 0.31 -2.62 16 20 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 21 H 0.40 15.31 8.45 -92.71 -0.78 14.52 16 22 H 0.03 1.29 7.82 -2.39 -0.02 1.28 16 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.38 7.49 7.56 -74.06 -0.56 6.93 16 27 H 0.12 1.88 8.11 -2.39 -0.02 1.86 16 28 H 0.10 1.50 6.37 -2.39 -0.02 1.49 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -79.38 269.12 0.29 -79.09 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.20 Total: 28.82 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 2.66 Total: -0.60 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.34 Total: -89.02 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -1.86 Total: -61.62 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -79.38 0.29 -79.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890721155.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.038 kcal (2) G-P(sol) polarization free energy of solvation -79.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds