Wall clock time and date at job start Sun Mar 29 2020 21:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48496 * 109.46996 * 270.00183 * 3 2 1 5 5 H 1.48504 * 109.46911 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.47296 * 149.99839 * 3 2 1 7 7 C 1.40055 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00079 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99826 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00027 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00213 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47334 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47284 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.47504 * 54.99322 * 14 13 12 16 16 O 1.42907 * 109.46879 * 294.99737 * 14 13 12 17 17 C 1.53003 * 109.47289 * 174.99887 * 14 13 12 18 18 C 1.53001 * 117.51964 * 116.28130 * 17 14 13 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 H 0.96992 * 119.99980 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99464 * 359.97438 * 11 9 7 22 22 H 1.09001 * 109.46829 * 59.99506 * 12 11 9 23 23 H 1.08998 * 109.46836 * 299.99897 * 12 11 9 24 24 H 1.09005 * 109.47185 * 59.99727 * 13 12 11 25 25 H 1.09007 * 109.47036 * 299.99937 * 13 12 11 26 26 H 0.96703 * 113.99453 * 299.99591 * 16 14 13 27 27 H 1.09002 * 115.54973 * 330.57913 * 17 14 13 28 28 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 29 29 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 30 30 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 31 31 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4401 0.7001 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6478 -0.0005 12 6 1.2165 -4.9165 -0.0011 13 6 2.2106 -6.0794 -0.0003 14 6 1.4456 -7.4044 -0.0016 15 1 0.7543 -7.4241 -0.8441 16 8 0.7131 -7.5325 1.2187 17 6 2.4353 -8.5646 -0.1266 18 6 2.5270 -9.5448 1.0446 19 6 1.8572 -9.9747 -0.2621 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6477 -0.0009 22 1 0.5901 -4.9740 -0.8913 23 1 0.5895 -4.9744 0.8886 24 1 2.8367 -6.0217 0.8901 25 1 2.8380 -6.0217 -0.8899 26 1 1.2658 -7.5229 2.0121 27 1 3.3536 -8.3427 -0.6702 28 1 3.5056 -9.9677 1.2715 29 1 1.8825 -9.3630 1.9046 30 1 0.7719 -10.0759 -0.2618 31 1 2.3953 -10.6805 -0.8950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890721218.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:21 Heat of formation + Delta-G solvation = -79.132628 kcal Electronic energy + Delta-G solvation = -13823.201426 eV Core-core repulsion = 11297.905296 eV Total energy + Delta-G solvation = -2525.296130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.00432 -37.18327 -35.23554 -33.69665 -32.33484 -30.47799 -26.81343 -25.07343 -22.63140 -21.52672 -20.64158 -19.53481 -17.23115 -16.68297 -15.93790 -15.43556 -15.11552 -14.60838 -13.95555 -13.66999 -13.51384 -12.59797 -12.30002 -12.00894 -11.68139 -11.57555 -11.10591 -11.06095 -10.85134 -10.63834 -10.54140 -10.43771 -10.24243 -10.19021 -9.78939 -8.81733 -7.56102 -7.43170 -6.14465 -4.60197 3.16248 3.22677 3.26283 3.60193 4.11892 4.28767 4.56456 4.63650 4.75768 4.82769 5.02881 5.11669 5.30402 5.48099 5.56782 5.63652 5.80140 5.84542 5.93989 5.98086 6.03485 6.10021 6.64644 6.72702 7.46718 7.67757 7.98100 8.16116 8.37240 9.06109 9.59496 10.64875 10.83908 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.085000 B = 0.005101 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.333619 B = 5488.205290 C = 5666.323366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.581 6.581 11 N -0.770 5.770 12 C 0.136 3.864 13 C -0.156 4.156 14 C 0.139 3.861 15 H 0.103 0.897 16 O -0.556 6.556 17 C -0.189 4.189 18 C -0.179 4.179 19 C -0.174 4.174 20 H 0.268 0.732 21 H 0.378 0.622 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.372 0.628 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -14.420 0.657 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.426 5.426 12 C 0.011 3.989 13 C -0.194 4.194 14 C 0.079 3.921 15 H 0.121 0.879 16 O -0.362 6.362 17 C -0.208 4.208 18 C -0.216 4.216 19 C -0.211 4.211 20 H 0.079 0.921 21 H 0.209 0.791 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.220 0.780 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.585 -14.339 0.250 15.390 hybrid contribution 1.556 0.774 0.266 1.758 sum 7.141 -13.564 0.516 15.338 Atomic orbital electron populations 1.70026 1.07064 1.27197 1.35479 1.25714 0.94605 1.00271 0.92652 0.86376 0.80122 0.81458 0.78785 1.19772 1.20468 1.18956 1.20897 0.93531 0.89488 1.54504 0.91499 1.18229 0.87235 0.82516 0.76355 1.90600 1.14119 1.86911 1.54721 1.46148 1.08425 1.05132 1.82860 1.20791 0.93783 0.83304 1.01039 1.22457 0.99130 0.95017 1.02792 1.21383 0.92114 0.90798 0.87766 0.87891 1.86615 1.37970 1.96013 1.15622 1.23218 1.01874 0.91773 1.03934 1.22942 1.02275 1.03406 0.92938 1.22909 1.00862 0.97029 1.00251 0.92141 0.79074 0.93631 0.92796 0.91403 0.90893 0.77993 0.87309 0.89054 0.88099 0.88485 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.60 11.83 55.55 0.66 -22.95 16 2 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -15.82 9.54 -35.63 -0.34 -16.16 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.29 7.75 -12.99 -0.10 16.19 16 10 O -0.58 -19.54 15.02 5.20 0.08 -19.47 16 11 N -0.77 -17.73 5.55 -61.73 -0.34 -18.07 16 12 C 0.14 2.70 5.57 -4.05 -0.02 2.67 16 13 C -0.16 -2.15 4.97 -26.74 -0.13 -2.28 16 14 C 0.14 1.72 3.31 -26.73 -0.09 1.63 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 16 O -0.56 -7.38 11.92 -35.23 -0.42 -7.80 16 17 C -0.19 -1.90 5.73 -90.61 -0.52 -2.42 16 18 C -0.18 -1.59 9.71 -26.73 -0.26 -1.85 16 19 C -0.17 -1.62 10.24 -26.73 -0.27 -1.90 16 20 H 0.27 7.43 8.29 -40.82 -0.34 7.10 16 21 H 0.38 7.54 8.45 -40.82 -0.35 7.19 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 1.18 7.82 -51.93 -0.41 0.77 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.37 3.80 7.79 45.56 0.36 4.15 16 27 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.88 6.47 -51.93 -0.34 0.55 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -35.46 269.26 -6.48 -41.94 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.66 Total: 8.62 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.83 Total: -1.73 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.31 Total: -41.02 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.34 Total: -27.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.46 -6.48 -41.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890721218.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.190 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds