Wall clock time and date at job start Sun Mar 29 2020 21:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48496 * 109.46996 * 270.00183 * 3 2 1 5 5 H 1.48504 * 109.46911 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.47296 * 149.99839 * 3 2 1 7 7 C 1.40055 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00079 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99826 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00027 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00213 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47334 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47284 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.47504 * 54.99322 * 14 13 12 16 16 O 1.42907 * 109.46879 * 294.99737 * 14 13 12 17 17 C 1.53003 * 109.47289 * 174.99887 * 14 13 12 18 18 C 1.53001 * 117.51964 * 116.28130 * 17 14 13 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 H 0.96992 * 119.99980 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99464 * 359.97438 * 11 9 7 22 22 H 1.09001 * 109.46829 * 59.99506 * 12 11 9 23 23 H 1.08998 * 109.46836 * 299.99897 * 12 11 9 24 24 H 1.09005 * 109.47185 * 59.99727 * 13 12 11 25 25 H 1.09007 * 109.47036 * 299.99937 * 13 12 11 26 26 H 0.96703 * 113.99453 * 299.99591 * 16 14 13 27 27 H 1.09002 * 115.54973 * 330.57913 * 17 14 13 28 28 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 29 29 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 30 30 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 31 31 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4401 0.7001 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6478 -0.0005 12 6 1.2165 -4.9165 -0.0011 13 6 2.2106 -6.0794 -0.0003 14 6 1.4456 -7.4044 -0.0016 15 1 0.7543 -7.4241 -0.8441 16 8 0.7131 -7.5325 1.2187 17 6 2.4353 -8.5646 -0.1266 18 6 2.5270 -9.5448 1.0446 19 6 1.8572 -9.9747 -0.2621 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6477 -0.0009 22 1 0.5901 -4.9740 -0.8913 23 1 0.5895 -4.9744 0.8886 24 1 2.8367 -6.0217 0.8901 25 1 2.8380 -6.0217 -0.8899 26 1 1.2658 -7.5229 2.0121 27 1 3.3536 -8.3427 -0.6702 28 1 3.5056 -9.9677 1.2715 29 1 1.8825 -9.3630 1.9046 30 1 0.7719 -10.0759 -0.2618 31 1 2.3953 -10.6805 -0.8950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890721218.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:21 Heat of formation + Delta-G solvation = -107.323248 kcal Electronic energy + Delta-G solvation = -13824.423864 eV Core-core repulsion = 11297.905296 eV Total energy + Delta-G solvation = -2526.518567 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.04383 -39.20907 -36.27048 -35.41477 -34.51340 -32.04688 -28.74253 -26.63281 -23.43435 -22.83804 -21.88801 -21.25383 -19.22598 -17.69309 -17.44238 -16.96564 -16.52092 -16.08851 -15.77227 -15.24514 -14.78100 -14.24822 -13.90278 -13.51748 -13.06211 -12.89573 -12.77638 -12.61029 -12.33822 -12.11967 -12.01532 -11.95702 -11.39929 -11.07171 -10.93525 -10.77429 -9.87359 -9.49066 -8.29365 -6.86782 1.40626 1.42731 1.58273 2.25193 2.46730 2.84351 3.05511 3.50728 3.61175 3.74727 3.96763 4.04655 4.14245 4.19597 4.48203 4.55999 4.71647 4.78401 4.82005 5.04768 5.15190 5.24159 5.26735 5.30608 5.31401 5.87098 6.24533 6.26641 6.81021 6.85860 7.55922 8.48942 8.67273 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.085000 B = 0.005101 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.333619 B = 5488.205290 C = 5666.323366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.247 1.247 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.532 3.468 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.138 3.862 13 C -0.137 4.137 14 C 0.141 3.859 15 H 0.090 0.910 16 O -0.575 6.575 17 C -0.192 4.192 18 C -0.171 4.171 19 C -0.176 4.176 20 H 0.275 0.725 21 H 0.396 0.604 22 H 0.023 0.977 23 H 0.029 0.971 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.385 0.615 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 -14.534 0.762 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.611 4.611 8 H 0.109 0.891 9 C 0.336 3.664 10 O -0.524 6.524 11 N -0.410 5.410 12 C 0.013 3.987 13 C -0.175 4.175 14 C 0.082 3.918 15 H 0.107 0.893 16 O -0.383 6.383 17 C -0.210 4.210 18 C -0.207 4.207 19 C -0.213 4.213 20 H 0.084 0.916 21 H 0.230 0.770 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.235 0.765 27 H 0.140 0.860 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.304 -14.511 0.362 16.723 hybrid contribution 0.689 0.732 0.244 1.034 sum 8.993 -13.779 0.605 16.465 Atomic orbital electron populations 1.70206 1.09715 1.29000 1.36505 1.27056 0.95536 1.05187 0.91121 0.84958 0.78727 0.74732 0.79456 1.18538 1.19843 1.17006 1.21467 0.94831 0.90012 1.54765 0.89148 1.18726 0.86887 0.84649 0.76143 1.90551 1.16451 1.88100 1.57303 1.45815 1.09327 1.04792 1.81099 1.20864 0.94909 0.84175 0.98759 1.22331 0.97798 0.92873 1.04493 1.21295 0.92249 0.91096 0.87170 0.89260 1.86590 1.39151 1.96051 1.16524 1.23064 1.01630 0.90969 1.05356 1.23038 1.02987 1.02222 0.92503 1.22970 1.00518 0.96776 1.01061 0.91555 0.76960 0.95865 0.95307 0.89628 0.89102 0.76518 0.85986 0.87379 0.88188 0.89609 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.81 11.83 21.84 0.26 -51.56 16 2 C 0.03 1.46 5.50 85.31 0.47 1.93 16 3 Si 1.00 41.30 29.56 68.60 2.03 43.33 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 7 C -0.57 -33.21 9.54 24.83 0.24 -32.97 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.53 32.08 7.75 86.36 0.67 32.75 16 10 O -0.64 -44.72 15.02 -4.30 -0.06 -44.79 16 11 N -0.76 -34.95 5.55 -467.43 -2.59 -37.54 16 12 C 0.14 5.56 5.57 86.38 0.48 6.04 16 13 C -0.14 -3.58 4.97 30.59 0.15 -3.43 16 14 C 0.14 3.36 3.31 30.59 0.10 3.46 16 15 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 16 O -0.58 -15.00 11.92 -148.98 -1.78 -16.77 16 17 C -0.19 -3.40 5.73 -10.79 -0.06 -3.46 16 18 C -0.17 -2.60 9.71 30.59 0.30 -2.31 16 19 C -0.18 -2.95 10.24 30.60 0.31 -2.63 16 20 H 0.27 15.56 8.29 -92.71 -0.77 14.80 16 21 H 0.40 15.31 8.45 -92.70 -0.78 14.52 16 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.03 1.30 7.82 -2.39 -0.02 1.28 16 24 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.38 7.45 7.79 -74.06 -0.58 6.87 16 27 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.55 6.47 -2.39 -0.02 1.53 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -79.41 269.26 0.29 -79.12 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.22 Total: 28.83 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 2.66 Total: -0.62 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.34 Total: -89.10 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.84 Total: -61.56 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -79.41 0.29 -79.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890721218.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.202 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds