Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47028 * 269.99961 * 3 2 1 5 5 H 1.48499 * 109.47298 * 30.00356 * 3 2 1 6 6 H 1.48505 * 109.46956 * 150.00147 * 3 2 1 7 7 C 1.37878 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00171 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.39058 * 119.99786 * 179.97438 * 10 9 7 12 12 N 1.32623 * 120.09809 * 0.02562 * 11 10 9 13 13 C 1.32263 * 119.92278 * 180.02562 * 12 11 10 14 14 C 1.38145 * 120.13925 * 359.97438 * 13 12 11 15 15 N 1.32287 * 120.20106 * 0.02562 * 14 13 12 16 16 C 1.32019 * 120.07223 * 0.02562 * 15 14 13 17 17 Cl 1.73609 * 120.06929 * 179.97438 * 16 15 14 18 18 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47088 * 60.00214 * 9 7 2 20 20 H 1.09002 * 109.47219 * 299.99925 * 9 7 2 21 21 H 0.96996 * 120.00013 * 0.02562 * 10 9 7 22 22 H 1.07995 * 119.93435 * 179.97438 * 13 12 11 23 23 H 1.07991 * 119.90000 * 179.72219 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3670 -2.8295 -0.0009 12 7 6.2305 -1.8230 -0.0015 13 6 7.5301 -2.0687 -0.0030 14 6 7.9898 -3.3714 -0.0034 15 7 7.1330 -4.3794 -0.0028 16 6 5.8341 -4.1435 -0.0024 17 17 4.7098 -5.4663 -0.0023 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6797 0.8895 20 1 3.8745 -0.6809 -0.8905 21 1 3.3694 -3.3127 0.0001 22 1 8.2335 -1.2492 -0.0039 23 1 9.0517 -3.5676 -0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893549490.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = 41.730889 kcal Electronic energy + Delta-G solvation = -11546.388137 eV Core-core repulsion = 9227.668768 eV Total energy + Delta-G solvation = -2318.719368 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.71011 -36.54078 -35.97868 -33.53412 -32.63809 -30.21604 -27.47036 -24.45121 -23.35089 -21.51815 -18.25030 -17.28988 -16.90270 -16.21860 -15.11814 -14.80357 -14.32724 -13.50542 -13.11252 -13.09604 -12.47085 -11.94709 -11.37598 -11.17790 -11.15747 -11.01070 -10.70891 -10.03134 -9.69095 -9.56364 -8.91314 -8.76925 -7.36532 -6.27073 -4.30531 1.03899 1.48626 2.00133 3.20955 3.27758 3.33846 3.59836 3.92197 4.26775 4.50190 4.58897 5.03898 5.07560 5.31732 5.40935 6.28557 6.59428 6.95222 7.19520 7.34615 7.46873 7.82200 8.27085 8.36039 8.72453 9.30802 10.84849 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.039894 B = 0.009036 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.699021 B = 3097.936471 C = 3784.491018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.226 3.774 10 N -0.672 5.672 11 C 0.387 3.613 12 N -0.493 5.493 13 C 0.116 3.884 14 C -0.036 4.036 15 N -0.396 5.396 16 C 0.043 3.957 17 Cl -0.031 7.031 18 H 0.269 0.731 19 H 0.029 0.971 20 H 0.025 0.975 21 H 0.413 0.587 22 H 0.170 0.830 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 -4.840 0.019 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.587 4.587 8 H 0.098 0.902 9 C 0.104 3.896 10 N -0.297 5.297 11 C 0.142 3.858 12 N -0.218 5.218 13 C -0.048 4.048 14 C -0.198 4.198 15 N -0.111 5.111 16 C -0.135 4.135 17 Cl -0.003 7.003 18 H 0.078 0.922 19 H 0.047 0.953 20 H 0.042 0.958 21 H 0.251 0.749 22 H 0.187 0.813 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.579 -4.607 0.023 13.396 hybrid contribution 0.060 0.470 -0.025 0.474 sum 12.640 -4.137 -0.002 13.300 Atomic orbital electron populations 1.69877 1.06234 1.27522 1.48979 1.24778 0.94803 0.99144 0.93774 0.86798 0.80566 0.83160 0.79037 1.19822 1.20851 1.18405 1.21061 0.88383 0.95402 1.53815 0.90182 1.19617 0.95353 0.77596 0.97047 1.45414 1.00280 1.11761 1.72294 1.19112 0.88363 0.87771 0.90572 1.68301 1.02758 1.32016 1.18696 1.23564 0.91732 0.97612 0.91842 1.23065 0.99752 0.88673 1.08271 1.67410 1.00907 1.36428 1.06393 1.21823 0.90596 0.87192 1.13882 1.98372 1.57446 1.47499 1.97025 0.92151 0.95282 0.95761 0.74891 0.81266 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.96 55.43 0.77 -25.35 14 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 14 3 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 14 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 14 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 6 H -0.26 -5.96 6.54 56.52 0.37 -5.59 14 7 C -0.55 -14.90 9.83 -34.44 -0.34 -15.23 14 8 H 0.08 2.30 7.84 -52.48 -0.41 1.89 14 9 C 0.23 5.36 4.54 -5.19 -0.02 5.33 14 10 N -0.67 -13.91 5.66 -61.44 -0.35 -14.26 14 11 C 0.39 7.34 7.49 -154.66 -1.16 6.18 14 12 N -0.49 -8.94 9.73 -12.21 -0.12 -9.06 14 13 C 0.12 1.56 11.21 -17.40 -0.20 1.37 14 14 C -0.04 -0.47 11.21 -17.39 -0.19 -0.66 14 15 N -0.40 -6.35 10.48 -10.01 -0.10 -6.45 14 16 C 0.04 0.75 7.31 -17.02 -0.12 0.62 14 17 Cl -0.03 -0.49 27.78 -51.86 -1.44 -1.93 14 18 H 0.27 7.36 8.31 -40.82 -0.34 7.02 14 19 H 0.03 0.71 7.20 -51.93 -0.37 0.34 14 20 H 0.02 0.59 7.57 -51.93 -0.39 0.20 14 21 H 0.41 8.15 7.00 -40.82 -0.29 7.86 14 22 H 0.17 1.57 8.06 -52.49 -0.42 1.14 14 23 H 0.17 1.48 8.06 -52.49 -0.42 1.05 14 LS Contribution 226.92 15.07 3.42 3.42 Total: -1.00 -29.99 226.92 -6.10 -36.08 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -1.48 Total: 1.79 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.13 Total: -0.29 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.20 Total: -55.12 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.44 Total: -1.93 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.99 -6.10 -36.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549490.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.813 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds