Wall clock time and date at job start Sun Mar 29 2020 21:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47028 * 269.99961 * 3 2 1 5 5 H 1.48499 * 109.47298 * 30.00356 * 3 2 1 6 6 H 1.48505 * 109.46956 * 150.00147 * 3 2 1 7 7 C 1.37878 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00171 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.39058 * 119.99786 * 179.97438 * 10 9 7 12 12 N 1.32623 * 120.09809 * 0.02562 * 11 10 9 13 13 C 1.32263 * 119.92278 * 180.02562 * 12 11 10 14 14 C 1.38145 * 120.13925 * 359.97438 * 13 12 11 15 15 N 1.32287 * 120.20106 * 0.02562 * 14 13 12 16 16 C 1.32019 * 120.07223 * 0.02562 * 15 14 13 17 17 Cl 1.73609 * 120.06929 * 179.97438 * 16 15 14 18 18 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47088 * 60.00214 * 9 7 2 20 20 H 1.09002 * 109.47219 * 299.99925 * 9 7 2 21 21 H 0.96996 * 120.00013 * 0.02562 * 10 9 7 22 22 H 1.07995 * 119.93435 * 179.97438 * 13 12 11 23 23 H 1.07991 * 119.90000 * 179.72219 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3670 -2.8295 -0.0009 12 7 6.2305 -1.8230 -0.0015 13 6 7.5301 -2.0687 -0.0030 14 6 7.9898 -3.3714 -0.0034 15 7 7.1330 -4.3794 -0.0028 16 6 5.8341 -4.1435 -0.0024 17 17 4.7098 -5.4663 -0.0023 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6797 0.8895 20 1 3.8745 -0.6809 -0.8905 21 1 3.3694 -3.3127 0.0001 22 1 8.2335 -1.2492 -0.0039 23 1 9.0517 -3.5676 -0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893549490.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:50 Heat of formation + Delta-G solvation = 19.951204 kcal Electronic energy + Delta-G solvation = -11547.332575 eV Core-core repulsion = 9227.668768 eV Total energy + Delta-G solvation = -2319.663806 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.95825 -37.79681 -37.47426 -35.06164 -34.41883 -31.72777 -29.14633 -25.82581 -24.74294 -23.25370 -19.86355 -18.73196 -18.20134 -17.79472 -16.60416 -16.45355 -15.57059 -15.25419 -14.80067 -14.43096 -14.23632 -13.22909 -12.98875 -12.82860 -12.62948 -12.38077 -12.21382 -11.87484 -11.65297 -11.11213 -10.82085 -10.14122 -8.77874 -8.39630 -6.48567 -0.15690 0.24529 0.77289 1.36510 1.37396 1.50483 2.17110 2.30061 2.72041 2.95865 3.31642 3.39497 3.81689 4.19593 4.45669 4.71730 5.05571 5.24305 5.25186 5.78044 6.00493 6.28583 6.49198 6.59934 6.96095 7.18752 8.75616 Molecular weight = 213.04amu Principal moments of inertia in cm(-1) A = 0.039894 B = 0.009036 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.699021 B = 3097.936471 C = 3784.491018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.556 4.556 8 H 0.047 0.953 9 C 0.247 3.753 10 N -0.691 5.691 11 C 0.365 3.635 12 N -0.520 5.520 13 C 0.120 3.880 14 C -0.010 4.010 15 N -0.411 5.411 16 C 0.028 3.972 17 Cl -0.029 7.029 18 H 0.272 0.728 19 H 0.023 0.977 20 H 0.021 0.979 21 H 0.411 0.589 22 H 0.219 0.781 23 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.248 -4.006 0.003 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.171 1.171 7 C -0.594 4.594 8 H 0.066 0.934 9 C 0.123 3.877 10 N -0.320 5.320 11 C 0.124 3.876 12 N -0.244 5.244 13 C -0.043 4.043 14 C -0.172 4.172 15 N -0.127 5.127 16 C -0.147 4.147 17 Cl -0.002 7.002 18 H 0.082 0.918 19 H 0.040 0.960 20 H 0.039 0.961 21 H 0.249 0.751 22 H 0.235 0.765 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 15.813 -3.821 0.007 16.268 hybrid contribution -0.730 0.115 -0.020 0.739 sum 15.083 -3.706 -0.014 15.532 Atomic orbital electron populations 1.70010 1.08064 1.28755 1.50505 1.25718 0.95624 1.03155 0.93265 0.85708 0.79519 0.78208 0.79558 1.18860 1.20223 1.17117 1.21324 0.90494 0.94362 1.53243 0.93442 1.19135 0.92679 0.79518 0.96323 1.45077 1.01458 1.10207 1.75209 1.19151 0.87596 0.88807 0.92069 1.68291 1.04696 1.32548 1.18896 1.24428 0.90635 0.99567 0.89631 1.24003 1.01518 0.87891 1.03810 1.67545 1.00461 1.37622 1.07075 1.21758 0.91269 0.86817 1.14811 1.98364 1.57627 1.47112 1.97069 0.91844 0.95961 0.96142 0.75065 0.76488 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.96 21.45 0.30 -55.99 14 2 C 0.02 1.26 5.47 84.65 0.46 1.72 14 3 Si 0.95 42.64 27.47 68.60 1.88 44.53 14 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 14 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 14 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 14 7 C -0.56 -31.13 9.83 25.60 0.25 -30.88 14 8 H 0.05 2.88 7.84 -2.91 -0.02 2.86 14 9 C 0.25 11.79 4.54 85.63 0.39 12.18 14 10 N -0.69 -29.11 5.66 -348.29 -1.97 -31.08 14 11 C 0.37 13.58 7.49 133.05 1.00 14.57 14 12 N -0.52 -17.64 9.73 -192.53 -1.87 -19.52 14 13 C 0.12 2.72 11.21 84.61 0.95 3.67 14 14 C -0.01 -0.20 11.21 84.60 0.95 0.75 14 15 N -0.41 -12.04 10.48 -185.58 -1.94 -13.99 14 16 C 0.03 0.94 7.31 84.96 0.62 1.56 14 17 Cl -0.03 -0.93 27.78 -2.72 -0.08 -1.01 14 18 H 0.27 15.22 8.31 -92.71 -0.77 14.45 14 19 H 0.02 1.09 7.20 -2.39 -0.02 1.07 14 20 H 0.02 0.99 7.57 -2.39 -0.02 0.97 14 21 H 0.41 16.96 7.00 -92.71 -0.65 16.32 14 22 H 0.22 2.67 8.06 -2.91 -0.02 2.65 14 23 H 0.22 2.37 8.06 -2.92 -0.02 2.35 14 Total: -1.00 -66.33 226.92 1.48 -64.86 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.54 Total: 8.63 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 4.62 Total: 3.57 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -5.49 Total: -120.58 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.53 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -66.33 1.48 -64.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549490.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.808 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds