Wall clock time and date at job start Sun Mar 29 2020 21:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47261 * 180.02562 * 14 12 11 16 16 O 1.42896 * 109.47483 * 179.97438 * 15 14 12 17 17 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 18 18 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 19 19 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 20 20 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 21 21 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 22 22 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 23 23 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 24 24 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 25 25 H 1.09003 * 109.46759 * 299.99798 * 15 14 12 26 26 H 1.09002 * 109.47303 * 59.99758 * 15 14 12 27 27 H 0.96702 * 113.99721 * 179.97438 * 16 15 14 28 28 H 1.08997 * 117.49622 * 359.97438 * 17 9 7 29 29 H 1.09000 * 117.49928 * 145.02150 * 17 9 7 30 30 H 1.08996 * 117.50254 * 214.97905 * 18 9 7 31 31 H 1.09005 * 117.49689 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 6 3.0420 -4.6298 5.6209 16 8 4.2506 -4.9162 6.3273 17 6 1.5731 -3.5804 -0.9271 18 6 0.2453 -2.8219 -0.9976 19 1 -0.4851 0.8368 -0.0732 20 1 0.3750 -2.1615 2.0429 21 1 0.3014 -3.8500 1.4844 22 1 3.0164 -3.0718 1.8343 23 1 3.9647 -4.7898 3.6811 24 1 3.9582 -3.1438 4.3583 25 1 2.4571 -3.9006 6.1816 26 1 2.4640 -5.5465 5.5038 27 1 4.1120 -5.2808 7.2121 28 1 2.3246 -3.3505 -1.6824 29 1 1.5429 -4.6177 -0.5938 30 1 -0.6578 -3.3606 -0.7107 31 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902931054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:47 Heat of formation + Delta-G solvation = -100.233327 kcal Electronic energy + Delta-G solvation = -14130.106464 eV Core-core repulsion = 11603.895338 eV Total energy + Delta-G solvation = -2526.211125 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74095 -38.56467 -37.64242 -34.97263 -33.96511 -32.27458 -28.23481 -27.17035 -24.19723 -22.92289 -21.39223 -20.91120 -18.88893 -18.11946 -17.22892 -16.99104 -16.69863 -16.44724 -15.70323 -15.21811 -14.79142 -14.56666 -14.18926 -13.76744 -13.47226 -12.95465 -12.88232 -12.77081 -12.33504 -12.22951 -12.02568 -11.42523 -10.97536 -10.95662 -10.92358 -10.45336 -10.05586 -9.85430 -8.10308 -6.24627 1.40882 1.45066 1.54012 1.68557 2.25319 2.42306 3.17866 3.40196 3.60531 3.84406 4.10352 4.22780 4.34359 4.54116 4.62294 4.66355 4.72470 4.88871 4.90085 4.99725 5.04011 5.28377 5.55122 5.58942 5.69884 5.78036 6.35985 6.72126 6.84089 6.87840 7.34147 7.45590 8.96981 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.007896 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.079386 B = 3545.111586 C = 4048.990394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.000 4.000 10 C 0.178 3.822 11 N -0.699 5.699 12 C 0.506 3.494 13 O -0.599 6.599 14 C -0.132 4.132 15 C 0.097 3.903 16 O -0.585 6.585 17 C -0.176 4.176 18 C -0.154 4.154 19 H 0.259 0.741 20 H 0.026 0.974 21 H 0.039 0.961 22 H 0.413 0.587 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.401 0.599 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -7.307 6.308 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.541 4.541 8 H 0.083 0.917 9 C -0.001 4.001 10 C 0.054 3.946 11 N -0.348 5.348 12 C 0.294 3.706 13 O -0.482 6.482 14 C -0.172 4.172 15 C 0.019 3.981 16 O -0.394 6.394 17 C -0.213 4.213 18 C -0.193 4.193 19 H 0.068 0.932 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.249 0.751 23 H 0.138 0.862 24 H 0.130 0.870 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.252 0.748 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.999 -7.102 6.170 11.726 hybrid contribution -0.137 1.066 0.103 1.080 sum 6.862 -6.036 6.272 11.085 Atomic orbital electron populations 1.70119 1.07300 1.27273 1.49999 1.25723 0.95486 1.02156 0.94417 0.85630 0.79593 0.80058 0.77108 1.18365 1.21000 1.21550 1.20721 0.93037 0.89494 1.50869 0.91651 1.19112 1.00286 0.94069 0.86653 1.20568 0.85224 0.96344 0.92467 1.45887 1.10706 1.62724 1.15467 1.21043 0.91476 0.76465 0.81625 1.90643 1.33151 1.55737 1.68665 1.21436 0.94659 1.05105 0.95982 1.21642 0.85816 0.99229 0.91440 1.86342 1.31467 1.87118 1.34508 1.23007 0.98840 0.95927 1.03570 1.22388 0.92148 1.01833 1.02901 0.93206 0.95556 0.94269 0.75130 0.86203 0.86986 0.93643 0.93035 0.74813 0.89614 0.89299 0.91286 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.24 12.65 21.45 0.27 -50.97 16 2 C 0.02 1.20 5.43 84.66 0.46 1.66 16 3 Si 0.95 41.92 29.54 68.60 2.03 43.94 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.50 -25.42 8.59 25.60 0.22 -25.20 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.00 -0.02 1.47 -52.93 -0.08 -0.10 16 10 C 0.18 8.05 5.50 86.38 0.48 8.52 16 11 N -0.70 -25.92 5.48 -463.06 -2.54 -28.46 16 12 C 0.51 17.84 7.83 87.66 0.69 18.53 16 13 O -0.60 -25.83 15.98 -3.01 -0.05 -25.88 16 14 C -0.13 -3.33 6.07 29.85 0.18 -3.15 16 15 C 0.10 2.33 6.34 71.98 0.46 2.79 16 16 O -0.59 -11.97 13.66 -148.98 -2.04 -14.01 16 17 C -0.18 -6.95 9.96 30.62 0.30 -6.65 16 18 C -0.15 -7.05 9.14 30.62 0.28 -6.77 16 19 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 20 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.04 1.75 8.09 -2.39 -0.02 1.73 16 22 H 0.41 13.56 8.33 -92.71 -0.77 12.79 16 23 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 26 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 27 H 0.40 4.33 9.12 -74.06 -0.68 3.66 16 28 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.06 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -64.30 273.83 0.35 -63.95 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.31 Total: 21.79 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 2.99 Total: -10.37 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.27 Total: -79.42 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -2.08 Total: -39.89 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -64.30 0.35 -63.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902931054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.286 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds