Wall clock time and date at job start Sun Mar 29 2020 21:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51276 * 137.67197 * 2 1 4 4 N 1.47121 * 87.69958 * 205.78804 * 3 2 1 5 5 C 1.34775 * 136.18157 * 153.54975 * 4 3 2 6 6 O 1.21282 * 120.00577 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99768 * 179.97438 * 5 4 3 8 8 S 1.81002 * 109.47349 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00182 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99949 * 179.97438 * 9 8 7 12 12 N 1.31630 * 119.99849 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00065 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46819 * 59.99977 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47086 * 300.00273 * 13 11 9 17 17 C 1.47116 * 87.62835 * 333.81119 * 4 3 2 18 18 H 1.07996 * 120.00175 * 359.97438 * 1 2 3 19 19 H 1.08000 * 119.99540 * 179.97438 * 1 2 3 20 20 H 1.09007 * 113.51016 * 91.08520 * 3 2 1 21 21 H 1.09002 * 113.57807 * 320.51048 * 3 2 1 22 22 H 1.09005 * 109.46867 * 60.00428 * 7 5 4 23 23 H 1.09000 * 109.47235 * 300.00468 * 7 5 4 24 24 H 0.97005 * 119.99878 * 179.97438 * 12 11 9 25 25 H 1.09006 * 113.51377 * 140.90059 * 17 4 3 26 26 H 1.09002 * 113.51466 * 271.48054 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0187 0.0000 4 7 3.2761 0.0003 -0.6395 5 6 4.3521 0.0007 -1.4511 6 8 4.8364 1.0512 -1.8156 7 6 4.9541 -1.3042 -1.9047 8 16 6.3752 -0.9731 -2.9757 9 6 6.8686 -2.6230 -3.3484 10 1 6.3201 -3.4569 -2.9358 11 6 7.9616 -2.8511 -4.1730 12 7 8.6298 -1.8348 -4.6762 13 14 8.4851 -4.6003 -4.5675 14 1 7.3702 -5.3097 -5.2451 15 1 9.6699 -4.5726 -5.4622 16 1 8.8308 -5.3093 -3.3093 17 6 2.4246 -1.0184 -0.0059 18 1 -0.5400 0.9353 0.0004 19 1 -0.5399 -0.9354 -0.0004 20 1 2.7626 1.2975 0.9994 21 1 2.2316 1.8822 -0.6353 22 1 4.2082 -1.8761 -2.4567 23 1 5.2799 -1.8757 -1.0356 24 1 9.3939 -1.9941 -5.2522 25 1 2.2236 -1.8770 -0.6467 26 1 2.7577 -1.3044 0.9918 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912445863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:10 Heat of formation + Delta-G solvation = 28.468239 kcal Electronic energy + Delta-G solvation = -11450.888879 eV Core-core repulsion = 9237.178449 eV Total energy + Delta-G solvation = -2213.710430 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.13700 -37.52489 -32.43350 -31.97656 -29.61252 -26.46108 -26.07521 -25.36807 -19.59604 -18.38212 -17.69729 -16.51824 -15.88114 -15.62942 -14.80695 -14.36149 -14.14033 -13.88608 -13.39903 -12.83200 -12.54421 -12.13696 -11.90641 -11.04713 -11.03847 -10.77720 -10.54609 -9.84434 -9.78744 -9.29873 -9.06245 -8.63976 -8.25161 -6.51212 -6.21681 -3.92869 1.84968 2.81756 3.09606 3.23554 3.25599 3.29185 3.58441 3.97428 4.19991 4.51158 4.86632 5.13227 5.26914 5.31319 5.45403 5.48744 5.56680 5.61370 5.89254 5.97914 6.07934 6.13682 6.49043 7.58991 7.86361 8.34811 8.52341 9.23174 10.85744 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.063272 B = 0.006375 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.429245 B = 4391.444873 C = 4743.524799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.172 4.172 3 C 0.136 3.864 4 N -0.652 5.652 5 C 0.565 3.435 6 O -0.514 6.514 7 C -0.144 4.144 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.920 3.080 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.274 1.274 17 C 0.133 3.867 18 H 0.111 0.889 19 H 0.112 0.888 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.269 0.731 25 H 0.084 0.916 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 0.218 10.026 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.173 4.173 3 C 0.013 3.987 4 N -0.391 5.391 5 C 0.355 3.645 6 O -0.387 6.387 7 C -0.294 4.294 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.746 3.254 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.010 3.990 18 H 0.129 0.871 19 H 0.130 0.870 20 H 0.110 0.890 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.139 1.845 9.193 16.142 hybrid contribution -0.213 -2.378 0.223 2.398 sum -13.352 -0.533 9.416 16.347 Atomic orbital electron populations 1.22833 0.92694 1.02680 1.00189 1.22930 0.94008 0.98675 1.01697 1.22050 0.85372 0.93241 0.98048 1.49491 1.30327 1.10483 1.48754 1.19905 0.76651 0.91455 0.76493 1.90717 1.59093 1.33625 1.55284 1.23475 1.04561 0.96640 1.04771 1.85404 1.28417 1.11475 1.58010 1.22822 1.17908 0.92011 1.35720 0.90940 1.24998 0.95289 0.98341 0.94935 1.70011 1.18885 1.30468 1.30905 0.86208 0.78120 0.82661 0.78415 1.19922 1.20780 1.19914 1.22060 0.85619 0.92993 0.98339 0.87059 0.86998 0.89038 0.90036 0.89248 0.89222 0.92095 0.89816 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 14.71 29.01 0.43 -0.69 15 2 C -0.17 -1.71 7.52 -100.68 -0.76 -2.47 15 3 C 0.14 1.63 8.59 -10.24 -0.09 1.54 15 4 N -0.65 -10.16 3.71 -191.68 -0.71 -10.87 15 5 C 0.57 11.60 8.10 -10.98 -0.09 11.52 15 6 O -0.51 -12.57 16.64 5.56 0.09 -12.48 15 7 C -0.14 -3.08 5.99 36.01 0.22 -2.87 15 8 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 15 9 C -0.54 -15.51 9.50 30.94 0.29 -15.22 15 10 H 0.07 1.98 7.80 -52.49 -0.41 1.57 15 11 C 0.07 2.13 5.49 -17.43 -0.10 2.03 15 12 N -0.87 -26.41 13.22 55.49 0.73 -25.68 15 13 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 15 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 17 C 0.13 1.46 8.37 -10.39 -0.09 1.37 15 18 H 0.11 0.71 8.06 -52.49 -0.42 0.28 15 19 H 0.11 0.69 8.06 -52.49 -0.42 0.27 15 20 H 0.09 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.09 1.78 8.14 -51.91 -0.42 1.36 15 23 H 0.09 1.77 8.14 -51.92 -0.42 1.35 15 24 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 25 H 0.08 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 254.37 15.07 3.83 3.83 Total: -1.00 -34.66 254.37 -6.39 -41.06 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -2.93 Total: -3.72 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.18 Total: -4.78 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.02 Total: -36.55 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.66 -6.39 -41.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912445863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.525 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds