Wall clock time and date at job start Sun Mar 29 2020 21:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51276 * 137.67197 * 2 1 4 4 N 1.47121 * 87.69958 * 205.78804 * 3 2 1 5 5 C 1.34775 * 136.18157 * 153.54975 * 4 3 2 6 6 O 1.21282 * 120.00577 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99768 * 179.97438 * 5 4 3 8 8 S 1.81002 * 109.47349 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00182 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99949 * 179.97438 * 9 8 7 12 12 N 1.31630 * 119.99849 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00065 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46819 * 59.99977 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47086 * 300.00273 * 13 11 9 17 17 C 1.47116 * 87.62835 * 333.81119 * 4 3 2 18 18 H 1.07996 * 120.00175 * 359.97438 * 1 2 3 19 19 H 1.08000 * 119.99540 * 179.97438 * 1 2 3 20 20 H 1.09007 * 113.51016 * 91.08520 * 3 2 1 21 21 H 1.09002 * 113.57807 * 320.51048 * 3 2 1 22 22 H 1.09005 * 109.46867 * 60.00428 * 7 5 4 23 23 H 1.09000 * 109.47235 * 300.00468 * 7 5 4 24 24 H 0.97005 * 119.99878 * 179.97438 * 12 11 9 25 25 H 1.09006 * 113.51377 * 140.90059 * 17 4 3 26 26 H 1.09002 * 113.51466 * 271.48054 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0187 0.0000 4 7 3.2761 0.0003 -0.6395 5 6 4.3521 0.0007 -1.4511 6 8 4.8364 1.0512 -1.8156 7 6 4.9541 -1.3042 -1.9047 8 16 6.3752 -0.9731 -2.9757 9 6 6.8686 -2.6230 -3.3484 10 1 6.3201 -3.4569 -2.9358 11 6 7.9616 -2.8511 -4.1730 12 7 8.6298 -1.8348 -4.6762 13 14 8.4851 -4.6003 -4.5675 14 1 7.3702 -5.3097 -5.2451 15 1 9.6699 -4.5726 -5.4622 16 1 8.8308 -5.3093 -3.3093 17 6 2.4246 -1.0184 -0.0059 18 1 -0.5400 0.9353 0.0004 19 1 -0.5399 -0.9354 -0.0004 20 1 2.7626 1.2975 0.9994 21 1 2.2316 1.8822 -0.6353 22 1 4.2082 -1.8761 -2.4567 23 1 5.2799 -1.8757 -1.0356 24 1 9.3939 -1.9941 -5.2522 25 1 2.2236 -1.8770 -0.6467 26 1 2.7577 -1.3044 0.9918 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912445863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:10 Heat of formation + Delta-G solvation = 4.076855 kcal Electronic energy + Delta-G solvation = -11451.946569 eV Core-core repulsion = 9237.178449 eV Total energy + Delta-G solvation = -2214.768120 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.30717 -38.94796 -34.61244 -33.06050 -31.05946 -27.86558 -27.39185 -26.96327 -21.02371 -19.66989 -19.16606 -17.97962 -17.06291 -17.01233 -16.88992 -15.88253 -15.49808 -15.18835 -14.66958 -14.19536 -13.97354 -13.58942 -13.21210 -13.01044 -12.87562 -12.63931 -11.78231 -11.36529 -11.16130 -11.14886 -10.35658 -10.30269 -9.80409 -8.72480 -8.36705 -6.16834 1.02963 1.25802 1.41893 1.43672 1.51581 1.58071 2.05545 2.25268 2.97253 3.14574 3.24089 3.59722 3.87298 4.18396 4.37853 4.42257 4.49631 4.53076 4.73049 4.79806 5.02416 5.38789 5.48429 5.76618 6.17223 6.58184 7.02096 7.03763 8.72550 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.063272 B = 0.006375 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.429245 B = 4391.444873 C = 4743.524799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.189 4.189 3 C 0.129 3.871 4 N -0.656 5.656 5 C 0.561 3.439 6 O -0.570 6.570 7 C -0.117 4.117 8 S -0.151 6.151 9 C -0.549 4.549 10 H 0.084 0.916 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 1.002 2.998 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.261 1.261 17 C 0.131 3.869 18 H 0.127 0.873 19 H 0.134 0.866 20 H 0.111 0.889 21 H 0.070 0.930 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.272 0.728 25 H 0.092 0.908 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 -1.798 11.264 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.190 4.190 3 C 0.007 3.993 4 N -0.392 5.392 5 C 0.350 3.650 6 O -0.449 6.449 7 C -0.268 4.268 8 S 0.076 5.924 9 C -0.697 4.697 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.823 3.177 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.185 1.185 17 C 0.010 3.990 18 H 0.145 0.855 19 H 0.152 0.848 20 H 0.129 0.871 21 H 0.089 0.911 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.290 -0.186 10.482 18.539 hybrid contribution 0.213 -1.694 -0.040 1.708 sum -15.078 -1.880 10.442 18.437 Atomic orbital electron populations 1.23226 0.91738 1.04500 0.95786 1.22637 0.94182 0.96577 1.05627 1.22335 0.85722 0.92952 0.98288 1.49492 1.28564 1.14066 1.47041 1.19627 0.77789 0.90140 0.77420 1.90684 1.61376 1.34888 1.57917 1.23254 1.01782 0.97860 1.03891 1.85596 1.32807 1.13336 1.60652 1.23165 1.18475 0.91902 1.36118 0.89825 1.26180 0.95054 1.03531 0.94394 1.70183 1.19521 1.33341 1.31711 0.84959 0.77926 0.76175 0.78646 1.18565 1.20272 1.18523 1.22382 0.84816 0.92623 0.99157 0.85483 0.84782 0.87117 0.91141 0.87640 0.87409 0.91882 0.88990 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 14.71 67.78 1.00 -0.27 15 2 C -0.19 -3.16 7.52 -16.21 -0.12 -3.28 15 3 C 0.13 2.90 8.59 82.03 0.70 3.60 15 4 N -0.66 -19.68 3.71 -878.75 -3.26 -22.94 15 5 C 0.56 23.25 8.10 87.66 0.71 23.96 15 6 O -0.57 -29.05 16.64 -3.04 -0.05 -29.10 15 7 C -0.12 -5.00 5.99 71.24 0.43 -4.57 15 8 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 15 9 C -0.55 -31.98 9.50 67.96 0.65 -31.34 15 10 H 0.08 4.50 7.80 -2.91 -0.02 4.48 15 11 C 0.01 0.76 5.49 84.86 0.47 1.23 15 12 N -0.91 -56.72 13.22 21.65 0.29 -56.43 15 13 Si 1.00 43.85 29.55 68.60 2.03 45.88 15 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 17 C 0.13 2.50 8.37 81.93 0.69 3.19 15 18 H 0.13 1.05 8.06 -2.91 -0.02 1.02 15 19 H 0.13 0.96 8.06 -2.91 -0.02 0.93 15 20 H 0.11 2.03 8.14 -2.38 -0.02 2.01 15 21 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.11 4.12 8.14 -2.39 -0.02 4.10 15 23 H 0.11 4.16 8.14 -2.40 -0.02 4.14 15 24 H 0.27 15.69 8.31 -92.70 -0.77 14.92 15 25 H 0.09 1.61 8.14 -2.38 -0.02 1.59 15 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 Total: -1.00 -78.17 254.37 3.52 -74.64 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.16 Total: 5.29 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 4.51 Total: -7.47 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.97 Total: -79.37 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -78.17 3.52 -74.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912445863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.721 kcal (2) G-P(sol) polarization free energy of solvation -78.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds