Wall clock time and date at job start Sun Mar 29 2020 21:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.45992 * 2 1 4 4 N 1.46849 * 109.46348 * 119.98014 * 2 1 3 5 5 C 1.46852 * 111.19624 * 58.27019 * 4 2 1 6 6 C 1.53036 * 109.52408 * 61.74277 * 5 4 2 7 7 C 1.53113 * 109.28001 * 300.82073 * 6 5 4 8 8 C 1.53042 * 109.45910 * 240.02866 * 2 1 3 9 9 H 1.09007 * 109.50207 * 179.18321 * 8 2 1 10 10 N 1.46902 * 109.50419 * 59.11132 * 8 2 1 11 11 C 1.46891 * 111.00293 * 154.99767 * 10 8 2 12 12 C 1.53007 * 109.47311 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46894 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.08995 * 109.47327 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46819 * 299.97342 * 1 2 3 23 23 H 1.09006 * 109.46658 * 59.96516 * 1 2 3 24 24 H 1.00898 * 110.99602 * 294.17709 * 4 2 1 25 25 H 1.08998 * 109.45546 * 181.76108 * 5 4 2 26 26 H 1.08994 * 109.45922 * 301.73664 * 5 4 2 27 27 H 1.09003 * 109.50191 * 60.76430 * 6 5 4 28 28 H 1.08998 * 109.49997 * 180.83478 * 6 5 4 29 29 H 1.08999 * 109.52169 * 297.75033 * 7 6 5 30 30 H 1.09001 * 109.52296 * 177.56082 * 7 6 5 31 31 H 1.00906 * 110.99572 * 278.95087 * 10 8 2 32 32 H 1.09000 * 109.47319 * 59.99748 * 11 10 8 33 33 H 1.08999 * 109.47480 * 299.99525 * 11 10 8 34 34 H 1.08995 * 109.46729 * 60.00100 * 12 11 10 35 35 H 1.09007 * 109.46460 * 299.99955 * 12 11 10 36 36 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0193 -0.6919 1.1993 5 6 1.5173 -2.0706 1.2589 6 6 2.0267 -2.8532 0.0464 7 6 1.5442 -2.1695 -1.2358 8 6 2.0398 -0.7209 -1.2500 9 1 3.1298 -0.7086 -1.2581 10 7 1.5330 -0.0408 -2.4494 11 6 2.4114 -0.2814 -3.6019 12 6 1.8517 0.4406 -4.8293 13 6 2.7526 0.1933 -6.0118 14 1 3.6358 -0.4181 -5.8993 15 6 2.4488 0.7466 -7.2376 16 7 3.2353 0.5312 -8.2694 17 14 0.9209 1.8034 -7.4324 18 1 -0.2295 0.9449 -7.8132 19 1 0.6245 2.4868 -6.1477 20 1 1.1528 2.8185 -8.4911 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3633 0.5144 -0.8897 24 1 1.7760 -0.1821 2.0353 25 1 1.8712 -2.5467 2.1733 26 1 0.4274 -2.0608 1.2528 27 1 3.1165 -2.8752 0.0592 28 1 1.6418 -3.8723 0.0832 29 1 0.4547 -2.1820 -1.2674 30 1 1.9407 -2.6988 -2.1022 31 1 0.5855 -0.3229 -2.6518 32 1 2.4629 -1.3515 -3.8024 33 1 3.4103 0.0956 -3.3824 34 1 1.8000 1.5108 -4.6291 35 1 0.8529 0.0632 -5.0487 36 1 3.0217 0.9208 -9.1316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925636640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:25 Heat of formation + Delta-G solvation = -13.496238 kcal Electronic energy + Delta-G solvation = -14512.758144 eV Core-core repulsion = 12223.859977 eV Total energy + Delta-G solvation = -2288.898166 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48339 -35.50561 -32.92474 -32.21565 -30.98536 -28.64974 -26.65811 -24.15319 -22.98310 -21.83513 -20.44433 -18.58097 -16.88003 -16.66344 -15.34137 -14.83564 -14.47271 -14.26977 -13.69513 -13.43720 -13.16357 -12.99755 -12.83316 -12.46407 -11.98178 -11.92434 -11.39575 -11.11910 -10.94411 -10.91174 -10.49856 -10.40100 -10.00399 -9.83916 -9.63419 -9.20527 -8.51856 -8.47493 -7.85362 -6.02563 -4.00710 3.33076 3.40636 3.46729 4.07839 4.47927 4.70477 4.81005 4.90625 4.97224 5.23798 5.28028 5.32073 5.47680 5.48516 5.56348 5.67139 5.79594 5.90476 5.97419 6.08787 6.10897 6.21015 6.25943 6.37551 6.48138 6.80646 6.97880 7.19623 7.32844 7.41110 7.65949 7.78992 7.94140 8.55529 9.01891 9.59970 11.10878 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055616 B = 0.006173 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.335004 B = 4534.662288 C = 4799.682342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.094 3.906 3 H 0.088 0.912 4 N -0.686 5.686 5 C 0.054 3.946 6 C -0.113 4.113 7 C -0.153 4.153 8 C 0.097 3.903 9 H 0.082 0.918 10 N -0.689 5.689 11 C 0.075 3.925 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.263 1.263 20 H -0.288 1.288 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.340 0.660 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.334 0.666 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.007 0.993 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -3.900 18.368 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.016 4.016 3 H 0.106 0.894 4 N -0.316 5.316 5 C -0.075 4.075 6 C -0.151 4.151 7 C -0.192 4.192 8 C -0.014 4.014 9 H 0.100 0.900 10 N -0.318 5.318 11 C -0.053 4.053 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.188 1.188 20 H -0.214 1.214 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.157 0.843 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.040 -3.421 18.035 19.036 hybrid contribution -1.947 -0.304 -0.276 1.989 sum -6.987 -3.725 17.759 19.444 Atomic orbital electron populations 1.22518 0.97992 1.01699 1.02307 1.21497 0.92419 0.98121 0.89542 0.89430 1.60422 1.63377 1.02852 1.04972 1.21926 0.97256 0.89786 0.98543 1.21507 1.01662 0.97922 0.94038 1.22366 1.00792 0.97977 0.98102 1.21488 0.99910 0.89975 0.90064 0.89991 1.60614 1.06008 1.60862 1.04349 1.21967 0.96085 0.97808 0.89445 1.19551 0.96057 0.96438 0.92732 1.21083 1.10248 1.31985 0.92586 0.91119 1.25009 0.96623 0.96010 0.95785 1.69919 1.38051 1.45414 1.00979 0.86750 0.83554 0.80696 0.78139 1.20449 1.18765 1.21436 0.92614 0.93457 0.90999 0.84257 0.91292 0.94954 0.91221 0.92005 0.92081 0.91688 0.84863 0.96032 0.91713 0.95675 0.97428 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 8.30 37.16 0.31 -1.77 16 2 C 0.09 1.17 3.40 -67.72 -0.23 0.94 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 4 N -0.69 -7.45 6.65 -106.76 -0.71 -8.16 16 5 C 0.05 0.54 6.25 -3.83 -0.02 0.52 16 6 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 7 C -0.15 -1.97 4.95 -26.61 -0.13 -2.10 16 8 C 0.10 1.39 2.33 -67.63 -0.16 1.23 16 9 H 0.08 1.31 7.80 -51.93 -0.41 0.91 16 10 N -0.69 -11.57 5.74 -106.64 -0.61 -12.18 16 11 C 0.08 1.54 5.42 -3.83 -0.02 1.51 16 12 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 13 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 17 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H 0.05 0.61 4.80 -51.93 -0.25 0.36 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.88 7.19 -51.93 -0.37 0.50 16 24 H 0.34 3.08 8.90 -39.29 -0.35 2.73 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.32 6.19 -51.93 -0.32 -0.01 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.76 6.51 -51.93 -0.34 0.42 16 30 H 0.06 0.91 7.54 -51.93 -0.39 0.52 16 31 H 0.33 5.35 7.69 -39.29 -0.30 5.05 16 32 H 0.02 0.44 7.50 -51.93 -0.39 0.05 16 33 H 0.06 1.37 8.06 -51.93 -0.42 0.95 16 34 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 274.71 15.07 4.14 4.14 Total: -1.00 -30.27 274.71 -8.05 -38.32 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.00 Total: 2.95 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.97 Total: -14.99 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.55 Total: -47.85 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.27 -8.05 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925636640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.826 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds