Wall clock time and date at job start Sun Mar 29 2020 21:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.45992 * 2 1 4 4 N 1.46849 * 109.46348 * 119.98014 * 2 1 3 5 5 C 1.46852 * 111.19624 * 58.27019 * 4 2 1 6 6 C 1.53036 * 109.52408 * 61.74277 * 5 4 2 7 7 C 1.53113 * 109.28001 * 300.82073 * 6 5 4 8 8 C 1.53042 * 109.45910 * 240.02866 * 2 1 3 9 9 H 1.09007 * 109.50207 * 179.18321 * 8 2 1 10 10 N 1.46902 * 109.50419 * 59.11132 * 8 2 1 11 11 C 1.46891 * 111.00293 * 154.99767 * 10 8 2 12 12 C 1.53007 * 109.47311 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46894 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.08995 * 109.47327 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46819 * 299.97342 * 1 2 3 23 23 H 1.09006 * 109.46658 * 59.96516 * 1 2 3 24 24 H 1.00898 * 110.99602 * 294.17709 * 4 2 1 25 25 H 1.08998 * 109.45546 * 181.76108 * 5 4 2 26 26 H 1.08994 * 109.45922 * 301.73664 * 5 4 2 27 27 H 1.09003 * 109.50191 * 60.76430 * 6 5 4 28 28 H 1.08998 * 109.49997 * 180.83478 * 6 5 4 29 29 H 1.08999 * 109.52169 * 297.75033 * 7 6 5 30 30 H 1.09001 * 109.52296 * 177.56082 * 7 6 5 31 31 H 1.00906 * 110.99572 * 278.95087 * 10 8 2 32 32 H 1.09000 * 109.47319 * 59.99748 * 11 10 8 33 33 H 1.08999 * 109.47480 * 299.99525 * 11 10 8 34 34 H 1.08995 * 109.46729 * 60.00100 * 12 11 10 35 35 H 1.09007 * 109.46460 * 299.99955 * 12 11 10 36 36 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0193 -0.6919 1.1993 5 6 1.5173 -2.0706 1.2589 6 6 2.0267 -2.8532 0.0464 7 6 1.5442 -2.1695 -1.2358 8 6 2.0398 -0.7209 -1.2500 9 1 3.1298 -0.7086 -1.2581 10 7 1.5330 -0.0408 -2.4494 11 6 2.4114 -0.2814 -3.6019 12 6 1.8517 0.4406 -4.8293 13 6 2.7526 0.1933 -6.0118 14 1 3.6358 -0.4181 -5.8993 15 6 2.4488 0.7466 -7.2376 16 7 3.2353 0.5312 -8.2694 17 14 0.9209 1.8034 -7.4324 18 1 -0.2295 0.9449 -7.8132 19 1 0.6245 2.4868 -6.1477 20 1 1.1528 2.8185 -8.4911 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3633 0.5144 -0.8897 24 1 1.7760 -0.1821 2.0353 25 1 1.8712 -2.5467 2.1733 26 1 0.4274 -2.0608 1.2528 27 1 3.1165 -2.8752 0.0592 28 1 1.6418 -3.8723 0.0832 29 1 0.4547 -2.1820 -1.2674 30 1 1.9407 -2.6988 -2.1022 31 1 0.5855 -0.3229 -2.6518 32 1 2.4629 -1.3515 -3.8024 33 1 3.4103 0.0956 -3.3824 34 1 1.8000 1.5108 -4.6291 35 1 0.8529 0.0632 -5.0487 36 1 3.0217 0.9208 -9.1316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925636640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:24 Heat of formation + Delta-G solvation = -36.166694 kcal Electronic energy + Delta-G solvation = -14513.741208 eV Core-core repulsion = 12223.859977 eV Total energy + Delta-G solvation = -2289.881231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51188 -36.96322 -34.92967 -33.15424 -32.60854 -30.09144 -27.74782 -25.85888 -24.09217 -22.88240 -22.30747 -19.63706 -18.96341 -17.73817 -16.54478 -16.32538 -15.97559 -15.69564 -15.00383 -14.65668 -14.49146 -14.35802 -14.12488 -13.91345 -13.42313 -12.97573 -12.82540 -12.78784 -12.10787 -12.02577 -11.92330 -11.79043 -11.75272 -11.44091 -11.29884 -11.15658 -10.77375 -9.36693 -9.19173 -8.30557 -6.35434 1.36096 1.39077 1.52229 2.36610 3.05016 3.06176 3.58755 3.85177 3.87028 4.04810 4.25218 4.31187 4.44131 4.48788 4.58726 4.63169 4.68011 4.72986 4.89046 4.94672 4.98886 5.03456 5.12258 5.21573 5.25337 5.36355 5.47397 5.49299 5.63168 6.05741 6.21860 6.26310 6.54242 6.58742 6.73504 7.29562 8.86348 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055616 B = 0.006173 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.335004 B = 4534.662288 C = 4799.682342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 H 0.076 0.924 4 N -0.692 5.692 5 C 0.056 3.944 6 C -0.111 4.111 7 C -0.149 4.149 8 C 0.095 3.905 9 H 0.060 0.940 10 N -0.684 5.684 11 C 0.090 3.910 12 C -0.003 4.003 13 C -0.536 4.536 14 H 0.030 0.970 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.247 1.247 20 H -0.283 1.283 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.353 0.647 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.341 0.659 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 -3.590 20.207 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.010 4.010 3 H 0.094 0.906 4 N -0.325 5.325 5 C -0.073 4.073 6 C -0.150 4.150 7 C -0.188 4.188 8 C -0.015 4.015 9 H 0.078 0.922 10 N -0.315 5.315 11 C -0.039 4.039 12 C -0.041 4.041 13 C -0.574 4.574 14 H 0.048 0.952 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.171 1.171 20 H -0.209 1.209 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.173 0.827 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.266 -3.121 19.913 21.426 hybrid contribution -1.149 -0.466 -0.823 1.488 sum -8.415 -3.586 19.090 21.169 Atomic orbital electron populations 1.22445 0.96655 1.02117 1.02603 1.21311 0.93331 0.97247 0.89102 0.90565 1.60359 1.63720 1.03470 1.04908 1.21967 0.97760 0.88989 0.98617 1.21514 1.01041 0.98931 0.93491 1.22300 1.01230 0.96700 0.98610 1.21514 0.98735 0.91310 0.89939 0.92183 1.60519 1.05773 1.61554 1.03639 1.21604 0.95929 0.96727 0.89633 1.19428 0.95575 0.96686 0.92390 1.21418 1.09851 1.31382 0.94753 0.95204 1.26021 1.00409 0.97513 0.95218 1.70071 1.40434 1.46944 1.01779 0.85582 0.78989 0.78802 0.78793 1.18993 1.17061 1.20923 0.92068 0.91836 0.92053 0.82745 0.89470 0.94028 0.92346 0.90276 0.91083 0.93501 0.83990 0.96707 0.93101 0.95833 0.96292 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 8.30 71.98 0.60 -2.92 16 2 C 0.10 2.31 3.40 44.94 0.15 2.46 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 N -0.69 -13.42 6.65 -491.68 -3.27 -16.69 16 5 C 0.06 0.94 6.25 86.32 0.54 1.48 16 6 C -0.11 -2.22 6.09 30.64 0.19 -2.03 16 7 C -0.15 -3.65 4.95 30.67 0.15 -3.50 16 8 C 0.10 2.67 2.33 44.97 0.10 2.78 16 9 H 0.06 1.94 7.80 -2.38 -0.02 1.92 16 10 N -0.68 -22.44 5.74 -491.29 -2.82 -25.26 16 11 C 0.09 3.72 5.42 86.31 0.47 4.19 16 12 C 0.00 -0.14 4.30 29.85 0.13 -0.02 16 13 C -0.54 -31.81 9.66 25.60 0.25 -31.56 16 14 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 15 C 0.01 0.31 5.47 84.65 0.46 0.77 16 16 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 17 Si 0.96 45.09 27.47 68.60 1.88 46.97 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H 0.06 1.14 4.80 -2.39 -0.01 1.12 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.34 7.19 -2.38 -0.02 1.33 16 24 H 0.35 5.38 8.90 -89.70 -0.80 4.59 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 0.65 6.19 -2.39 -0.01 0.64 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.60 6.51 -2.39 -0.02 1.59 16 30 H 0.05 1.30 7.54 -2.39 -0.02 1.29 16 31 H 0.34 10.39 7.69 -89.69 -0.69 9.70 16 32 H 0.01 0.62 7.50 -2.39 -0.02 0.60 16 33 H 0.05 2.22 8.06 -2.39 -0.02 2.20 16 34 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 35 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -65.68 274.71 -1.35 -67.03 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.48 Total: 16.77 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.04 Total: -28.34 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -5.79 Total: -102.42 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -65.68 -1.35 -67.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925636640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.862 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds