Wall clock time and date at job start Sun Mar 29 2020 21:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.45959 * 2 1 4 4 N 1.46841 * 109.45395 * 240.02644 * 2 1 3 5 5 C 1.46850 * 111.19613 * 178.24460 * 4 2 1 6 6 C 1.53031 * 109.52227 * 61.74069 * 5 4 2 7 7 C 1.53114 * 109.28242 * 300.82165 * 6 5 4 8 8 C 1.53032 * 109.46425 * 119.97565 * 2 1 3 9 9 H 1.09004 * 109.50432 * 59.20288 * 8 2 1 10 10 N 1.46908 * 109.50425 * 299.13173 * 8 2 1 11 11 C 1.46901 * 110.99757 * 155.00214 * 10 8 2 12 12 C 1.53000 * 109.46565 * 180.02562 * 11 10 8 13 13 C 1.50708 * 109.46973 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08998 * 109.47182 * 300.01949 * 1 2 3 22 22 H 1.08996 * 109.47313 * 60.02250 * 1 2 3 23 23 H 1.09001 * 109.46694 * 180.02562 * 1 2 3 24 24 H 1.00896 * 111.00510 * 302.34137 * 4 2 1 25 25 H 1.09000 * 109.45953 * 181.76043 * 5 4 2 26 26 H 1.09003 * 109.46375 * 301.73714 * 5 4 2 27 27 H 1.09005 * 109.50066 * 60.76503 * 6 5 4 28 28 H 1.09004 * 109.50141 * 180.83648 * 6 5 4 29 29 H 1.09004 * 109.52327 * 297.74736 * 7 6 5 30 30 H 1.08998 * 109.52363 * 177.56357 * 7 6 5 31 31 H 1.00901 * 110.99662 * 278.94974 * 10 8 2 32 32 H 1.08996 * 109.47370 * 59.99954 * 11 10 8 33 33 H 1.08996 * 109.46858 * 299.98937 * 11 10 8 34 34 H 1.08994 * 109.48028 * 59.99667 * 12 11 10 35 35 H 1.09000 * 109.47206 * 299.99521 * 12 11 10 36 36 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0191 -0.6917 -1.1994 5 6 3.4863 -0.6778 -1.2592 6 6 4.0546 -1.4189 -0.0469 7 6 3.5709 -0.7362 1.2354 8 6 2.0399 -0.7209 1.2499 9 1 1.6652 -1.7445 1.2580 10 7 1.5678 -0.0164 2.4494 11 6 1.5022 -0.9250 3.6019 12 6 1.0069 -0.1570 4.8290 13 6 0.9390 -1.0892 6.0113 14 1 1.2212 -2.1255 5.8987 15 6 0.5175 -0.6187 7.2368 16 7 0.4587 -1.4321 8.2686 17 14 0.0299 1.1740 7.4317 18 1 1.2222 1.9726 7.8138 19 1 -1.0054 1.2932 8.4896 20 1 -0.5147 1.6814 6.1467 21 1 -0.3633 0.5141 0.8898 22 1 -0.3634 0.5135 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6644 -1.6353 -1.2426 25 1 3.8171 -1.1700 -2.1738 26 1 3.8403 0.3531 -1.2531 27 1 3.7122 -2.4537 -0.0597 28 1 5.1437 -1.3956 -0.0839 29 1 3.9458 0.2868 1.2671 30 1 3.9380 -1.2865 2.1017 31 1 2.1495 0.7829 2.6517 32 1 2.4941 -1.3300 3.8022 33 1 0.8138 -1.7411 3.3824 34 1 0.0150 0.2478 4.6286 35 1 1.6948 0.6594 5.0487 36 1 0.1618 -1.1011 9.1307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925636642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:30 Heat of formation + Delta-G solvation = -20.154913 kcal Electronic energy + Delta-G solvation = -14457.964216 eV Core-core repulsion = 12168.777308 eV Total energy + Delta-G solvation = -2289.186908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35621 -35.48565 -32.93778 -32.58942 -30.94034 -28.61040 -26.42958 -24.20068 -22.43340 -21.36593 -20.79486 -20.03990 -16.79184 -15.54857 -15.42014 -15.11413 -14.74792 -14.34634 -13.87088 -13.56381 -13.07616 -12.73471 -12.46132 -12.33921 -11.78459 -11.69354 -11.46050 -11.14907 -11.11156 -10.91634 -10.87119 -10.59007 -10.08196 -9.92089 -9.75586 -9.23694 -8.54426 -8.49067 -7.81884 -6.05064 -4.03532 3.31614 3.39260 3.45205 4.17901 4.45833 4.56398 4.68645 4.89670 4.95662 5.19034 5.29588 5.34113 5.38868 5.44849 5.67757 5.76009 5.83502 5.85991 5.99126 6.09473 6.11679 6.21866 6.29899 6.32822 6.53890 6.76098 6.94857 7.16126 7.33003 7.37240 7.61248 7.75040 7.89901 8.52462 8.98855 9.57369 11.08346 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050515 B = 0.006237 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.161637 B = 4488.319281 C = 4737.228394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.095 3.905 3 H 0.077 0.923 4 N -0.682 5.682 5 C 0.057 3.943 6 C -0.153 4.153 7 C -0.151 4.151 8 C 0.058 3.942 9 H 0.072 0.928 10 N -0.683 5.683 11 C 0.075 3.925 12 C -0.009 4.009 13 C -0.522 4.522 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.882 3.118 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.263 1.263 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.338 0.662 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.335 0.665 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.008 0.992 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 2.569 -17.540 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 H 0.095 0.905 4 N -0.311 5.311 5 C -0.073 4.073 6 C -0.193 4.193 7 C -0.190 4.190 8 C -0.055 4.055 9 H 0.091 0.909 10 N -0.312 5.312 11 C -0.053 4.053 12 C -0.047 4.047 13 C -0.560 4.560 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.187 1.187 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.155 0.845 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.026 0.974 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.051 3.045 -17.919 18.622 hybrid contribution 1.102 -0.005 1.331 1.728 sum 5.153 3.040 -16.588 17.634 Atomic orbital electron populations 1.21674 0.93677 1.01688 1.02142 1.21519 0.96029 0.97751 0.86253 0.90520 1.60850 1.08281 1.22352 1.39609 1.22004 0.87933 1.00635 0.96728 1.22238 1.01025 0.99898 0.96178 1.22341 0.97765 1.01014 0.97921 1.22350 0.92009 0.98509 0.92629 0.90943 1.60693 1.55916 1.10437 1.04150 1.21966 0.98613 0.95130 0.89634 1.19543 0.96556 0.95956 0.92672 1.21072 1.44788 0.97503 0.92655 0.91210 1.25008 0.94931 0.97710 0.95763 1.69916 1.47983 1.35430 1.01001 0.86744 0.78575 0.85613 0.78178 1.20423 1.21411 1.18732 0.90407 0.93019 0.93473 0.84482 0.90989 0.91108 0.92087 0.91756 0.91891 0.91782 0.84805 0.96183 0.91903 0.95640 0.97376 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.32 37.16 0.35 -1.34 16 2 C 0.09 1.17 2.74 -67.73 -0.19 0.98 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 N -0.68 -7.43 6.50 -106.77 -0.69 -8.12 16 5 C 0.06 0.55 6.55 -3.84 -0.03 0.53 16 6 C -0.15 -1.57 6.08 -26.66 -0.16 -1.73 16 7 C -0.15 -1.88 5.25 -26.61 -0.14 -2.02 16 8 C 0.06 0.79 2.05 -67.63 -0.14 0.65 16 9 H 0.07 1.07 7.80 -51.93 -0.41 0.66 16 10 N -0.68 -11.18 5.53 -106.64 -0.59 -11.77 16 11 C 0.07 1.51 5.42 -3.82 -0.02 1.48 16 12 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 13 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 17 Si 0.88 21.99 27.47 -169.99 -4.67 17.33 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 21 H 0.08 1.10 7.63 -51.93 -0.40 0.70 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.34 3.45 8.79 -39.29 -0.35 3.11 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.77 8.10 -51.93 -0.42 0.34 16 30 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 31 H 0.33 5.28 8.45 -39.29 -0.33 4.94 16 32 H 0.02 0.41 7.50 -51.93 -0.39 0.02 16 33 H 0.06 1.30 8.06 -51.93 -0.42 0.89 16 34 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -29.87 282.98 -8.20 -38.07 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.41 Total: 2.91 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.88 Total: -15.30 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.51 Total: -47.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.87 -8.20 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925636642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.912 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds