Wall clock time and date at job start Sun Mar 29 2020 21:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.45959 * 2 1 4 4 N 1.46841 * 109.45395 * 240.02644 * 2 1 3 5 5 C 1.46850 * 111.19613 * 178.24460 * 4 2 1 6 6 C 1.53031 * 109.52227 * 61.74069 * 5 4 2 7 7 C 1.53114 * 109.28242 * 300.82165 * 6 5 4 8 8 C 1.53032 * 109.46425 * 119.97565 * 2 1 3 9 9 H 1.09004 * 109.50432 * 59.20288 * 8 2 1 10 10 N 1.46908 * 109.50425 * 299.13173 * 8 2 1 11 11 C 1.46901 * 110.99757 * 155.00214 * 10 8 2 12 12 C 1.53000 * 109.46565 * 180.02562 * 11 10 8 13 13 C 1.50708 * 109.46973 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08998 * 109.47182 * 300.01949 * 1 2 3 22 22 H 1.08996 * 109.47313 * 60.02250 * 1 2 3 23 23 H 1.09001 * 109.46694 * 180.02562 * 1 2 3 24 24 H 1.00896 * 111.00510 * 302.34137 * 4 2 1 25 25 H 1.09000 * 109.45953 * 181.76043 * 5 4 2 26 26 H 1.09003 * 109.46375 * 301.73714 * 5 4 2 27 27 H 1.09005 * 109.50066 * 60.76503 * 6 5 4 28 28 H 1.09004 * 109.50141 * 180.83648 * 6 5 4 29 29 H 1.09004 * 109.52327 * 297.74736 * 7 6 5 30 30 H 1.08998 * 109.52363 * 177.56357 * 7 6 5 31 31 H 1.00901 * 110.99662 * 278.94974 * 10 8 2 32 32 H 1.08996 * 109.47370 * 59.99954 * 11 10 8 33 33 H 1.08996 * 109.46858 * 299.98937 * 11 10 8 34 34 H 1.08994 * 109.48028 * 59.99667 * 12 11 10 35 35 H 1.09000 * 109.47206 * 299.99521 * 12 11 10 36 36 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0191 -0.6917 -1.1994 5 6 3.4863 -0.6778 -1.2592 6 6 4.0546 -1.4189 -0.0469 7 6 3.5709 -0.7362 1.2354 8 6 2.0399 -0.7209 1.2499 9 1 1.6652 -1.7445 1.2580 10 7 1.5678 -0.0164 2.4494 11 6 1.5022 -0.9250 3.6019 12 6 1.0069 -0.1570 4.8290 13 6 0.9390 -1.0892 6.0113 14 1 1.2212 -2.1255 5.8987 15 6 0.5175 -0.6187 7.2368 16 7 0.4587 -1.4321 8.2686 17 14 0.0299 1.1740 7.4317 18 1 1.2222 1.9726 7.8138 19 1 -1.0054 1.2932 8.4896 20 1 -0.5147 1.6814 6.1467 21 1 -0.3633 0.5141 0.8898 22 1 -0.3634 0.5135 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6644 -1.6353 -1.2426 25 1 3.8171 -1.1700 -2.1738 26 1 3.8403 0.3531 -1.2531 27 1 3.7122 -2.4537 -0.0597 28 1 5.1437 -1.3956 -0.0839 29 1 3.9458 0.2868 1.2671 30 1 3.9380 -1.2865 2.1017 31 1 2.1495 0.7829 2.6517 32 1 2.4941 -1.3300 3.8022 33 1 0.8138 -1.7411 3.3824 34 1 0.0150 0.2478 4.6286 35 1 1.6948 0.6594 5.0487 36 1 0.1618 -1.1011 9.1307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925636642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:29 Heat of formation + Delta-G solvation = -42.049069 kcal Electronic energy + Delta-G solvation = -14458.913618 eV Core-core repulsion = 12168.777308 eV Total energy + Delta-G solvation = -2290.136310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38136 -36.92364 -34.92068 -33.54064 -32.56548 -30.05188 -27.55391 -25.84797 -23.63875 -22.42994 -22.24482 -21.31422 -18.98368 -16.78233 -16.52164 -16.27799 -16.01014 -15.92518 -15.24870 -14.84505 -14.67446 -14.37375 -13.67968 -13.48810 -13.29853 -12.98344 -12.75045 -12.62607 -12.17885 -12.10732 -11.94909 -11.88277 -11.75501 -11.65660 -11.46777 -11.37507 -10.78667 -9.55996 -9.04239 -8.31894 -6.36859 1.35538 1.38347 1.51465 2.35519 3.03858 3.15165 3.46377 3.68114 3.98130 3.98792 4.19976 4.35194 4.38400 4.47995 4.48520 4.57764 4.72763 4.86226 4.92279 4.94480 4.98400 5.08446 5.16260 5.21649 5.23534 5.34162 5.47353 5.51520 5.61861 5.99931 6.20476 6.25203 6.45500 6.55555 6.72053 7.28333 8.84966 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050515 B = 0.006237 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.161637 B = 4488.319281 C = 4737.228394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.104 3.896 3 H 0.076 0.924 4 N -0.681 5.681 5 C 0.059 3.941 6 C -0.147 4.147 7 C -0.149 4.149 8 C 0.059 3.941 9 H 0.060 0.940 10 N -0.679 5.679 11 C 0.091 3.909 12 C -0.003 4.003 13 C -0.536 4.536 14 H 0.029 0.971 15 C 0.006 3.994 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.247 1.247 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.342 0.658 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.341 0.659 32 H 0.012 0.988 33 H 0.050 0.950 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 4.299 -19.326 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.007 4.007 3 H 0.095 0.905 4 N -0.310 5.310 5 C -0.071 4.071 6 C -0.187 4.187 7 C -0.188 4.188 8 C -0.053 4.053 9 H 0.079 0.921 10 N -0.309 5.309 11 C -0.038 4.038 12 C -0.041 4.041 13 C -0.574 4.574 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.170 1.170 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.160 0.840 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.159 0.841 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.410 4.771 -19.739 20.781 hybrid contribution 1.026 -0.649 1.858 2.219 sum 5.437 4.121 -17.881 19.139 Atomic orbital electron populations 1.21621 0.93924 1.01474 1.01806 1.21384 0.95770 0.97619 0.85906 0.90549 1.60854 1.09236 1.22679 1.38263 1.22064 0.86922 1.00923 0.97153 1.22202 1.01857 0.99578 0.95090 1.22287 0.96576 1.01395 0.98541 1.22409 0.93049 0.97814 0.91989 0.92148 1.60600 1.56773 1.10048 1.03483 1.21590 0.97605 0.94852 0.89751 1.19423 0.96791 0.95457 0.92404 1.21415 1.44514 0.96691 0.94810 0.95255 1.26015 0.94805 1.03086 0.95228 1.70067 1.49303 1.38044 1.01795 0.85587 0.78675 0.79105 0.78834 1.19069 1.20918 1.17009 0.92069 0.91970 0.93648 0.83954 0.89063 0.90903 0.92211 0.90430 0.91304 0.93648 0.84080 0.96976 0.93103 0.95779 0.96376 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.32 71.98 0.67 -2.41 16 2 C 0.10 2.35 2.74 44.94 0.12 2.47 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 N -0.68 -13.13 6.50 -491.70 -3.20 -16.32 16 5 C 0.06 0.96 6.55 86.32 0.57 1.53 16 6 C -0.15 -2.67 6.08 30.64 0.19 -2.49 16 7 C -0.15 -3.48 5.25 30.67 0.16 -3.32 16 8 C 0.06 1.55 2.05 44.96 0.09 1.65 16 9 H 0.06 1.74 7.80 -2.39 -0.02 1.72 16 10 N -0.68 -21.54 5.53 -491.30 -2.72 -24.26 16 11 C 0.09 3.68 5.42 86.30 0.47 4.14 16 12 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 13 C -0.54 -31.58 9.66 25.60 0.25 -31.33 16 14 H 0.03 1.90 7.99 -2.92 -0.02 1.87 16 15 C 0.01 0.33 5.47 84.65 0.46 0.79 16 16 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 17 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 21 H 0.06 1.65 7.63 -2.39 -0.02 1.63 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.34 6.21 8.79 -89.70 -0.79 5.42 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 30 H 0.04 1.23 7.54 -2.39 -0.02 1.21 16 31 H 0.34 10.18 8.45 -89.69 -0.76 9.42 16 32 H 0.01 0.50 7.50 -2.39 -0.02 0.48 16 33 H 0.05 2.15 8.06 -2.39 -0.02 2.13 16 34 H 0.02 1.15 7.20 -2.39 -0.02 1.14 16 35 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -64.40 282.98 -1.18 -65.58 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.56 Total: 17.36 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.11 Total: -28.97 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -5.61 Total: -100.77 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -64.40 -1.18 -65.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925636642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.527 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds