Wall clock time and date at job start Sun Mar 29 2020 21:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46710 * 2 1 4 4 N 1.46848 * 109.45132 * 119.97549 * 2 1 3 5 5 C 1.46847 * 111.19788 * 181.75163 * 4 2 1 6 6 C 1.53034 * 109.52486 * 298.25416 * 5 4 2 7 7 C 1.53126 * 109.27454 * 59.18079 * 6 5 4 8 8 C 1.53035 * 109.46519 * 240.02109 * 2 1 3 9 9 H 1.09009 * 109.50165 * 300.75734 * 8 2 1 10 10 N 1.46894 * 109.50316 * 60.87449 * 8 2 1 11 11 C 1.46902 * 111.00228 * 204.80396 * 10 8 2 12 12 C 1.53000 * 109.47295 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47147 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00148 * 0.02562 * 13 12 11 15 15 C 1.37885 * 120.00125 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99784 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99949 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47199 * 90.00035 * 17 15 13 19 19 H 1.48504 * 109.47067 * 210.00033 * 17 15 13 20 20 H 1.48503 * 109.47442 * 329.99708 * 17 15 13 21 21 H 1.09000 * 109.47554 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47191 * 299.97935 * 1 2 3 23 23 H 1.09004 * 109.46922 * 59.97925 * 1 2 3 24 24 H 1.00897 * 111.00120 * 57.65486 * 4 2 1 25 25 H 1.08999 * 109.46634 * 178.23927 * 5 4 2 26 26 H 1.09006 * 109.46422 * 58.27823 * 5 4 2 27 27 H 1.08997 * 109.50792 * 299.24185 * 6 5 4 28 28 H 1.09006 * 109.50471 * 179.11839 * 6 5 4 29 29 H 1.09001 * 109.52438 * 62.24983 * 7 6 5 30 30 H 1.09000 * 109.51793 * 182.37754 * 7 6 5 31 31 H 1.00899 * 110.99905 * 80.85303 * 10 8 2 32 32 H 1.09001 * 109.47459 * 300.00206 * 11 10 8 33 33 H 1.09002 * 109.46841 * 60.00085 * 11 10 8 34 34 H 1.09001 * 109.47053 * 300.00476 * 12 11 10 35 35 H 1.09002 * 109.47088 * 60.00259 * 12 11 10 36 36 H 0.96997 * 119.99608 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0189 -0.6918 1.1995 5 6 3.4861 -0.6780 1.2593 6 6 4.0545 -1.4193 0.0471 7 6 3.5709 -0.7364 -1.2353 8 6 2.0399 -0.7210 -1.2498 9 1 1.6657 -1.7448 -1.2575 10 7 1.5679 -0.0165 -2.4493 11 6 1.5066 -0.9239 -3.6029 12 6 1.0113 -0.1560 -4.8301 13 6 0.9479 -1.0870 -6.0134 14 1 1.2320 -2.1230 -5.9013 15 6 0.5272 -0.6164 -7.2392 16 7 0.1808 0.6450 -7.3756 17 14 0.4479 -1.7706 -8.7057 18 1 -0.8945 -2.4028 -8.7661 19 1 0.6901 -1.0029 -9.9536 20 1 1.4851 -2.8239 -8.5634 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5142 -0.8898 24 1 1.6642 -1.6354 1.2426 25 1 3.8170 -1.1702 2.1738 26 1 3.8402 0.3529 1.2535 27 1 3.7120 -2.4540 0.0598 28 1 5.1436 -1.3954 0.0837 29 1 3.9458 0.2866 -1.2669 30 1 3.9388 -1.2862 -2.1016 31 1 2.1477 0.7846 -2.6498 32 1 2.4999 -1.3261 -3.8021 33 1 0.8202 -1.7422 -3.3854 34 1 0.0179 0.2458 -4.6307 35 1 1.6974 0.6625 -5.0478 36 1 -0.1148 0.9761 -8.2380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925636643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:32 Heat of formation + Delta-G solvation = -23.476064 kcal Electronic energy + Delta-G solvation = -14411.252394 eV Core-core repulsion = 12121.921470 eV Total energy + Delta-G solvation = -2289.330924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.28695 -35.35388 -32.97357 -32.53674 -30.67394 -28.24444 -26.30110 -24.18332 -22.47575 -21.30954 -20.79531 -20.10049 -16.35228 -15.46460 -15.36401 -15.03438 -14.65280 -14.41070 -14.01352 -13.46009 -12.82187 -12.65910 -12.44695 -11.97941 -11.70630 -11.61752 -11.18846 -11.06591 -10.96953 -10.88750 -10.81685 -10.57511 -10.49814 -9.99070 -9.44309 -9.16319 -8.42359 -8.34813 -7.70011 -6.00308 -4.02923 3.31511 3.37576 3.40593 4.23325 4.43689 4.66775 4.75323 4.95653 5.01512 5.26015 5.35660 5.40029 5.44707 5.50620 5.73851 5.80657 5.89405 5.91409 6.05214 6.15648 6.19909 6.35968 6.36990 6.44530 6.62065 6.97187 7.03225 7.37835 7.50272 7.72588 7.82678 7.95847 8.08103 8.43230 9.04334 9.60874 11.11113 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054523 B = 0.005769 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.426169 B = 4852.487420 C = 5110.857197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.095 3.905 3 H 0.077 0.923 4 N -0.682 5.682 5 C 0.057 3.943 6 C -0.153 4.153 7 C -0.151 4.151 8 C 0.058 3.942 9 H 0.070 0.930 10 N -0.680 5.680 11 C 0.067 3.933 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.337 0.663 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.336 0.664 32 H 0.013 0.987 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -2.515 15.029 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 H 0.095 0.905 4 N -0.311 5.311 5 C -0.073 4.073 6 C -0.193 4.193 7 C -0.190 4.190 8 C -0.055 4.055 9 H 0.088 0.912 10 N -0.309 5.309 11 C -0.061 4.061 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.154 0.846 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.674 -1.899 15.465 16.267 hybrid contribution 1.271 -1.437 -1.918 2.713 sum 5.945 -3.336 13.547 15.165 Atomic orbital electron populations 1.21671 0.93667 1.01604 1.02205 1.21522 0.96042 0.97763 0.86226 0.90492 1.60855 1.08227 1.22280 1.39728 1.22000 0.87990 1.00640 0.96663 1.22242 1.00952 0.99843 0.96282 1.22349 0.97930 1.01005 0.97763 1.22344 0.91866 0.98412 0.92873 0.91158 1.60674 1.55966 1.10272 1.03979 1.22165 0.97989 0.95349 0.90583 1.19061 0.97047 0.95194 0.89876 1.21175 1.44480 0.96128 0.94308 0.92864 1.24999 0.95370 0.95074 0.98875 1.69972 1.44867 1.13905 1.24478 0.86593 0.78399 0.80814 0.82176 1.20600 1.21198 1.19975 0.93578 0.93060 0.90280 0.84563 0.91055 0.91092 0.92174 0.91829 0.91878 0.91899 0.84680 0.96845 0.92563 0.95644 0.96880 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.32 37.15 0.35 -1.43 16 2 C 0.09 1.23 2.74 -67.73 -0.19 1.04 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 N -0.68 -7.75 6.50 -106.77 -0.69 -8.45 16 5 C 0.06 0.58 6.55 -3.84 -0.03 0.55 16 6 C -0.15 -1.63 6.08 -26.65 -0.16 -1.79 16 7 C -0.15 -1.97 5.25 -26.61 -0.14 -2.11 16 8 C 0.06 0.83 2.05 -67.64 -0.14 0.69 16 9 H 0.07 1.08 7.81 -51.92 -0.41 0.67 16 10 N -0.68 -11.87 5.53 -106.64 -0.59 -12.46 16 11 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 12 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.19 7.63 -51.93 -0.40 0.79 16 24 H 0.34 3.59 8.79 -39.29 -0.35 3.24 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 31 H 0.34 5.78 8.45 -39.29 -0.33 5.45 16 32 H 0.01 0.28 7.49 -51.93 -0.39 -0.11 16 33 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 286.57 15.07 4.32 4.32 Total: -1.00 -29.30 286.57 -8.58 -37.87 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.44 Total: 3.06 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.88 Total: -14.78 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.55 Total: -47.23 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.30 -8.58 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925636643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.397 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds