Wall clock time and date at job start Sun Mar 29 2020 21:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46710 * 2 1 4 4 N 1.46848 * 109.45132 * 119.97549 * 2 1 3 5 5 C 1.46847 * 111.19788 * 181.75163 * 4 2 1 6 6 C 1.53034 * 109.52486 * 298.25416 * 5 4 2 7 7 C 1.53126 * 109.27454 * 59.18079 * 6 5 4 8 8 C 1.53035 * 109.46519 * 240.02109 * 2 1 3 9 9 H 1.09009 * 109.50165 * 300.75734 * 8 2 1 10 10 N 1.46894 * 109.50316 * 60.87449 * 8 2 1 11 11 C 1.46902 * 111.00228 * 204.80396 * 10 8 2 12 12 C 1.53000 * 109.47295 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47147 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00148 * 0.02562 * 13 12 11 15 15 C 1.37885 * 120.00125 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99784 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99949 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47199 * 90.00035 * 17 15 13 19 19 H 1.48504 * 109.47067 * 210.00033 * 17 15 13 20 20 H 1.48503 * 109.47442 * 329.99708 * 17 15 13 21 21 H 1.09000 * 109.47554 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47191 * 299.97935 * 1 2 3 23 23 H 1.09004 * 109.46922 * 59.97925 * 1 2 3 24 24 H 1.00897 * 111.00120 * 57.65486 * 4 2 1 25 25 H 1.08999 * 109.46634 * 178.23927 * 5 4 2 26 26 H 1.09006 * 109.46422 * 58.27823 * 5 4 2 27 27 H 1.08997 * 109.50792 * 299.24185 * 6 5 4 28 28 H 1.09006 * 109.50471 * 179.11839 * 6 5 4 29 29 H 1.09001 * 109.52438 * 62.24983 * 7 6 5 30 30 H 1.09000 * 109.51793 * 182.37754 * 7 6 5 31 31 H 1.00899 * 110.99905 * 80.85303 * 10 8 2 32 32 H 1.09001 * 109.47459 * 300.00206 * 11 10 8 33 33 H 1.09002 * 109.46841 * 60.00085 * 11 10 8 34 34 H 1.09001 * 109.47053 * 300.00476 * 12 11 10 35 35 H 1.09002 * 109.47088 * 60.00259 * 12 11 10 36 36 H 0.96997 * 119.99608 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0189 -0.6918 1.1995 5 6 3.4861 -0.6780 1.2593 6 6 4.0545 -1.4193 0.0471 7 6 3.5709 -0.7364 -1.2353 8 6 2.0399 -0.7210 -1.2498 9 1 1.6657 -1.7448 -1.2575 10 7 1.5679 -0.0165 -2.4493 11 6 1.5066 -0.9239 -3.6029 12 6 1.0113 -0.1560 -4.8301 13 6 0.9479 -1.0870 -6.0134 14 1 1.2320 -2.1230 -5.9013 15 6 0.5272 -0.6164 -7.2392 16 7 0.1808 0.6450 -7.3756 17 14 0.4479 -1.7706 -8.7057 18 1 -0.8945 -2.4028 -8.7661 19 1 0.6901 -1.0029 -9.9536 20 1 1.4851 -2.8239 -8.5634 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5142 -0.8898 24 1 1.6642 -1.6354 1.2426 25 1 3.8170 -1.1702 2.1738 26 1 3.8402 0.3529 1.2535 27 1 3.7120 -2.4540 0.0598 28 1 5.1436 -1.3954 0.0837 29 1 3.9458 0.2866 -1.2669 30 1 3.9388 -1.2862 -2.1016 31 1 2.1477 0.7846 -2.6498 32 1 2.4999 -1.3261 -3.8021 33 1 0.8202 -1.7422 -3.3854 34 1 0.0179 0.2458 -4.6307 35 1 1.6974 0.6625 -5.0478 36 1 -0.1148 0.9761 -8.2380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925636643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:32 Heat of formation + Delta-G solvation = -44.184338 kcal Electronic energy + Delta-G solvation = -14412.150372 eV Core-core repulsion = 12121.921470 eV Total energy + Delta-G solvation = -2290.228902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37118 -36.87498 -34.95418 -33.53860 -32.26127 -29.79442 -27.50687 -25.95690 -23.74158 -22.49952 -22.26979 -21.34687 -18.53555 -16.81035 -16.49338 -16.34113 -16.04793 -15.89093 -15.33621 -14.63227 -14.49124 -14.23451 -13.66098 -13.38732 -13.15268 -12.89097 -12.75829 -12.62300 -12.46407 -12.24043 -12.11447 -11.85845 -11.72095 -11.59386 -11.40885 -11.23806 -10.58024 -9.53388 -9.01928 -8.21934 -6.33746 1.38989 1.40656 1.51481 2.39012 3.11405 3.18775 3.48650 3.68187 3.99115 3.99528 4.20808 4.35582 4.40473 4.51303 4.53133 4.60268 4.73935 4.86752 4.94148 4.97637 5.04655 5.08732 5.16805 5.22651 5.29524 5.42699 5.51130 5.66103 5.76125 6.02480 6.16570 6.30263 6.46632 6.56825 6.83456 7.35657 8.90147 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054523 B = 0.005769 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.426169 B = 4852.487420 C = 5110.857197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.104 3.896 3 H 0.072 0.928 4 N -0.680 5.680 5 C 0.058 3.942 6 C -0.146 4.146 7 C -0.149 4.149 8 C 0.060 3.940 9 H 0.063 0.937 10 N -0.682 5.682 11 C 0.089 3.911 12 C 0.033 3.967 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.264 1.264 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.343 0.657 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.337 0.663 32 H 0.014 0.986 33 H 0.053 0.947 34 H -0.005 1.005 35 H -0.010 1.010 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -3.748 15.875 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.007 4.007 3 H 0.090 0.910 4 N -0.309 5.309 5 C -0.071 4.071 6 C -0.186 4.186 7 C -0.188 4.188 8 C -0.052 4.052 9 H 0.082 0.918 10 N -0.312 5.312 11 C -0.040 4.040 12 C -0.004 4.004 13 C -0.585 4.585 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.188 1.188 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.161 0.839 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.155 0.845 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.013 0.987 35 H 0.009 0.991 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.447 -3.141 16.340 17.508 hybrid contribution 1.035 -1.015 -2.127 2.574 sum 6.482 -4.157 14.213 16.166 Atomic orbital electron populations 1.21606 0.94001 1.01525 1.01617 1.21365 0.95719 0.97515 0.86103 0.90962 1.60844 1.09260 1.22680 1.38147 1.22071 0.86907 1.00869 0.97278 1.22199 1.01850 0.99634 0.94892 1.22290 0.96580 1.01223 0.98700 1.22407 0.93051 0.97822 0.91892 0.91843 1.60583 1.56882 1.09979 1.03752 1.21738 0.97486 0.94869 0.89927 1.18905 0.94917 0.94728 0.91897 1.21604 1.44703 0.96713 0.95461 0.92367 1.25968 0.94666 0.96789 1.02201 1.70105 1.45549 1.15942 1.25493 0.85425 0.78886 0.78627 0.77959 1.19683 1.20587 1.18818 0.93398 0.91943 0.92533 0.83852 0.88875 0.91137 0.91909 0.90378 0.91774 0.93481 0.84541 0.96776 0.92841 0.98671 0.99132 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.32 71.98 0.67 -2.67 16 2 C 0.10 2.56 2.74 44.93 0.12 2.68 16 3 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 4 N -0.68 -13.87 6.50 -491.70 -3.20 -17.06 16 5 C 0.06 1.01 6.55 86.32 0.57 1.57 16 6 C -0.15 -2.73 6.08 30.65 0.19 -2.55 16 7 C -0.15 -3.69 5.25 30.67 0.16 -3.53 16 8 C 0.06 1.69 2.05 44.97 0.09 1.78 16 9 H 0.06 1.88 7.81 -2.38 -0.02 1.86 16 10 N -0.68 -24.11 5.53 -491.30 -2.72 -26.83 16 11 C 0.09 3.80 5.42 86.30 0.47 4.27 16 12 C 0.03 1.79 5.23 29.85 0.16 1.94 16 13 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 17 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.71 7.63 -2.38 -0.02 1.69 16 24 H 0.34 6.44 8.79 -89.70 -0.79 5.65 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.05 1.31 7.53 -2.39 -0.02 1.30 16 31 H 0.34 11.79 8.45 -89.69 -0.76 11.04 16 32 H 0.01 0.60 7.49 -2.39 -0.02 0.58 16 33 H 0.05 2.30 8.06 -2.39 -0.02 2.28 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -62.77 286.57 -0.99 -63.76 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.50 Total: 17.93 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 3.12 Total: -27.36 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -5.63 Total: -100.95 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.77 -0.99 -63.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925636643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.576 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds