Wall clock time and date at job start Sun Mar 29 2020 22:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.49139 * 2 1 4 4 C 1.54572 * 110.43825 * 122.49096 * 2 1 3 5 5 C 1.54496 * 102.14787 * 91.88948 * 4 2 1 6 6 C 1.52996 * 110.36687 * 134.28573 * 5 4 2 7 7 N 1.46494 * 110.36614 * 256.51029 * 5 4 2 8 8 C 1.36945 * 119.99612 * 180.02562 * 7 5 4 9 9 H 1.07999 * 120.00077 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99637 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00227 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99854 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46819 * 59.99973 * 12 10 8 14 14 H 1.48494 * 109.47285 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47086 * 300.00269 * 12 10 8 16 16 C 1.51332 * 104.82289 * 15.34413 * 5 4 2 17 17 O 1.20827 * 125.09450 * 182.29589 * 16 5 4 18 18 O 1.34065 * 109.81301 * 2.31477 * 16 5 4 19 19 H 1.08999 * 109.47035 * 297.51370 * 1 2 3 20 20 H 1.09005 * 109.47415 * 57.50740 * 1 2 3 21 21 H 1.08998 * 109.47776 * 177.51201 * 1 2 3 22 22 H 1.08994 * 109.47451 * 182.49168 * 3 2 1 23 23 H 1.09006 * 109.46974 * 302.48774 * 3 2 1 24 24 H 1.09004 * 109.47345 * 62.49023 * 3 2 1 25 25 H 1.08999 * 110.87119 * 333.72571 * 4 2 1 26 26 H 1.09004 * 110.86228 * 210.05240 * 4 2 1 27 27 H 1.08997 * 109.46811 * 181.53843 * 6 5 4 28 28 H 1.09000 * 109.47743 * 301.54105 * 6 5 4 29 29 H 1.09004 * 109.47001 * 61.54730 * 6 5 4 30 30 H 0.96995 * 120.00290 * 0.27016 * 7 5 4 31 31 H 0.97005 * 120.00046 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4331 0.0000 4 6 2.0698 -0.7780 1.2217 5 6 2.2300 -2.2056 0.6531 6 6 3.5822 -2.7930 1.0621 7 7 1.1394 -3.0654 1.1194 8 6 1.0889 -4.3780 0.7320 9 1 1.8529 -4.7791 0.0824 10 6 0.0558 -5.1929 1.1742 11 7 -0.8754 -4.7039 1.9654 12 14 -0.0134 -6.9831 0.6452 13 1 1.2151 -7.6818 1.1013 14 1 -1.2046 -7.6320 1.2494 15 1 -0.1053 -7.0586 -0.8350 16 6 2.1602 -2.0342 -0.8488 17 8 2.2069 -2.9342 -1.6536 18 8 2.0393 -0.7341 -1.1527 19 1 -0.3633 0.4747 0.9114 20 1 -0.3634 0.5521 -0.8668 21 1 -0.3634 -1.0266 -0.0446 22 1 3.1545 1.4141 -0.0447 23 1 1.6757 1.9667 -0.8669 24 1 1.7482 1.9397 0.9115 25 1 1.3496 -0.7645 2.0398 26 1 3.0315 -0.3778 1.5428 27 1 3.6912 -3.7882 0.6311 28 1 4.3831 -2.1496 0.6979 29 1 3.6355 -2.8599 2.1488 30 1 0.4511 -2.7042 1.6996 31 1 -1.5976 -5.2733 2.2741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930872951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:45 Heat of formation + Delta-G solvation = -97.938057 kcal Electronic energy + Delta-G solvation = -15143.800209 eV Core-core repulsion = 12617.688614 eV Total energy + Delta-G solvation = -2526.111595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.22336 -38.69681 -37.11751 -34.58558 -33.78110 -30.79890 -28.41246 -27.91517 -25.84294 -24.66158 -22.31020 -20.42104 -19.13764 -17.79987 -17.66241 -16.85111 -16.27135 -15.72437 -15.39771 -15.11953 -14.50291 -14.25748 -13.67468 -13.45482 -13.33352 -13.14499 -12.95172 -12.85121 -12.68635 -12.58147 -12.43426 -12.24431 -12.04702 -11.66208 -11.40943 -11.20117 -10.73850 -9.14967 -8.01824 -5.31030 1.15899 1.42094 1.45049 1.51397 2.33246 2.51221 3.08753 3.40258 3.44977 3.69812 3.74881 3.93234 4.07862 4.36854 4.69300 4.76418 4.77207 4.83667 4.88135 4.90268 4.99439 5.08374 5.21605 5.31879 5.36592 5.55049 5.93356 6.20475 6.65023 7.28935 7.88574 8.18492 9.19587 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.010267 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.360164 B = 2726.572359 C = 2879.416918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 C -0.133 4.133 4 C -0.136 4.136 5 C 0.137 3.863 6 C -0.138 4.138 7 N -0.701 5.701 8 C -0.237 4.237 9 H 0.065 0.935 10 C -0.062 4.062 11 N -0.959 5.959 12 Si 0.962 3.038 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.291 1.291 16 C 0.462 3.538 17 O -0.505 6.505 18 O -0.366 6.366 19 H 0.106 0.894 20 H 0.072 0.928 21 H 0.030 0.970 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.386 0.614 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 13.681 1.237 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 C -0.189 4.189 4 C -0.174 4.174 5 C 0.044 3.956 6 C -0.197 4.197 7 N -0.345 5.345 8 C -0.369 4.369 9 H 0.083 0.917 10 C -0.255 4.255 11 N -0.608 5.608 12 Si 0.791 3.209 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.218 1.218 16 C 0.302 3.698 17 O -0.390 6.390 18 O -0.284 6.284 19 H 0.125 0.875 20 H 0.091 0.909 21 H 0.049 0.951 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.129 0.871 25 H 0.125 0.875 26 H 0.145 0.855 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.221 0.779 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.192 13.214 0.598 14.605 hybrid contribution -0.705 -1.460 -0.388 1.667 sum 5.488 11.753 0.210 12.973 Atomic orbital electron populations 1.22281 0.93266 1.01991 1.04741 1.23413 0.94563 0.94117 0.81593 1.21899 1.02427 0.89750 1.04858 1.23357 1.05328 0.90850 0.97832 1.21201 0.92308 0.93626 0.88501 1.22025 0.94412 1.00535 1.02703 1.42435 1.27586 1.07222 1.57239 1.19370 1.07147 0.87379 1.22990 0.91691 1.25395 0.97443 1.01935 1.00705 1.69747 1.15186 1.36579 1.39311 0.85395 0.77204 0.81007 0.77282 1.20097 1.21202 1.21828 1.25075 0.70039 0.81024 0.93679 1.90561 1.46612 1.42504 1.59286 1.86946 1.77069 1.20908 1.43455 0.87492 0.90868 0.95069 0.90506 0.91087 0.87108 0.87521 0.85450 0.94575 0.90387 0.90208 0.77888 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 8.79 71.98 0.63 -3.95 16 2 C 0.10 2.65 1.24 -10.26 -0.01 2.64 16 3 C -0.13 -2.21 8.91 71.98 0.64 -1.56 16 4 C -0.14 -3.66 5.53 31.64 0.17 -3.49 16 5 C 0.14 5.36 1.08 3.57 0.00 5.36 16 6 C -0.14 -4.88 8.39 71.98 0.60 -4.28 16 7 N -0.70 -34.46 5.18 -303.52 -1.57 -36.03 16 8 C -0.24 -13.53 8.61 84.03 0.72 -12.81 16 9 H 0.07 3.86 6.68 -2.91 -0.02 3.84 16 10 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 11 N -0.96 -57.33 13.06 21.65 0.28 -57.05 16 12 Si 0.96 47.99 29.55 68.60 2.03 50.02 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 16 C 0.46 20.66 7.14 71.44 0.51 21.17 16 17 O -0.50 -27.15 16.99 21.63 0.37 -26.78 16 18 O -0.37 -13.66 10.48 -50.17 -0.53 -14.19 16 19 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 20 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 21 H 0.03 1.14 8.03 -2.39 -0.02 1.12 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 2.73 7.42 -2.39 -0.02 2.72 16 26 H 0.13 2.47 7.60 -2.38 -0.02 2.45 16 27 H 0.04 1.49 7.20 -2.39 -0.02 1.47 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.39 19.38 7.40 -92.71 -0.69 18.70 16 31 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -72.05 261.41 4.76 -67.29 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.44 Total: 16.76 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 3.74 Total: -0.03 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -1.29 Total: -93.08 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.16 Total: -40.97 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -72.05 4.76 -67.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930872951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.644 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds