Wall clock time and date at job start Sun Mar 29 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.49096 * 2 1 4 4 C 1.54571 * 110.44104 * 122.48685 * 2 1 3 5 5 C 1.54496 * 102.33363 * 145.48500 * 4 2 1 6 6 C 1.52997 * 110.37034 * 225.92210 * 5 4 2 7 7 N 1.46506 * 110.36508 * 103.59819 * 5 4 2 8 8 C 1.36937 * 120.00005 * 180.02562 * 7 5 4 9 9 H 1.08007 * 119.99690 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00235 * 179.97438 * 8 7 5 11 11 N 1.31621 * 120.00012 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00263 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46827 * 60.00478 * 12 10 8 14 14 H 1.48492 * 109.47264 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47255 * 300.00346 * 12 10 8 16 16 C 1.51728 * 104.62828 * 344.87560 * 5 4 2 17 17 O 1.20832 * 125.06151 * 177.56366 * 16 5 4 18 18 O 1.34064 * 109.84954 * 357.43479 * 16 5 4 19 19 H 1.09005 * 109.46927 * 297.51390 * 1 2 3 20 20 H 1.09002 * 109.46991 * 57.50853 * 1 2 3 21 21 H 1.08991 * 109.46999 * 177.51158 * 1 2 3 22 22 H 1.09000 * 109.47249 * 182.48942 * 3 2 1 23 23 H 1.09003 * 109.47408 * 302.49094 * 3 2 1 24 24 H 1.09009 * 109.47197 * 62.48885 * 3 2 1 25 25 H 1.09002 * 110.87009 * 263.75567 * 4 2 1 26 26 H 1.09003 * 110.86587 * 27.22510 * 4 2 1 27 27 H 1.09005 * 109.46758 * 60.00100 * 6 5 4 28 28 H 1.08997 * 109.46985 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47421 * 300.00440 * 6 5 4 30 30 H 0.97000 * 120.00070 * 359.97438 * 7 5 4 31 31 H 0.96995 * 120.00238 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4332 0.0000 4 6 2.0698 -0.7779 1.2217 5 6 3.3504 -1.4321 0.6569 6 6 3.4206 -2.9049 1.0651 7 7 4.5387 -0.7147 1.1255 8 6 5.7855 -1.1303 0.7408 9 1 5.8928 -1.9872 0.0922 10 6 6.9113 -0.4503 1.1844 11 7 6.7806 0.5937 1.9752 12 14 8.6122 -1.0177 0.6602 13 1 8.7186 -0.9606 -0.8200 14 1 9.6381 -0.1302 1.2642 15 1 8.8318 -2.4129 1.1188 16 6 3.2148 -1.3024 -0.8488 17 8 4.0420 -1.6604 -1.6536 18 8 2.0393 -0.7340 -1.1527 19 1 -0.3633 0.4748 0.9115 20 1 -0.3633 0.5520 -0.8668 21 1 -0.3633 -1.0266 -0.0446 22 1 3.1545 1.4142 -0.0446 23 1 1.6757 1.9668 -0.8668 24 1 1.7481 1.9398 0.9115 25 1 2.3092 -0.0986 2.0398 26 1 1.3567 -1.5363 1.5451 27 1 2.5503 -3.4322 0.6743 28 1 4.3281 -3.3516 0.6591 29 1 3.4331 -2.9804 2.1524 30 1 4.4423 0.0551 1.7077 31 1 7.5673 1.0691 2.2849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930872952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:47 Heat of formation + Delta-G solvation = -76.212625 kcal Electronic energy + Delta-G solvation = -15138.332757 eV Core-core repulsion = 12613.163248 eV Total energy + Delta-G solvation = -2525.169510 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67760 -36.97872 -35.35563 -33.07889 -32.02058 -28.92813 -27.37298 -26.56557 -23.91571 -22.96805 -20.90910 -18.85936 -17.14871 -16.12329 -15.98020 -15.35588 -14.54124 -14.07453 -13.72391 -13.47441 -12.97114 -12.95946 -12.31549 -12.20138 -11.85999 -11.68459 -11.57262 -11.49091 -11.13796 -10.87862 -10.80586 -10.45641 -10.15892 -10.02309 -9.82756 -9.37477 -8.81749 -7.12388 -5.83737 -3.14511 2.87788 3.46121 3.49073 3.53295 3.76032 4.55740 4.63239 4.70935 4.88838 5.02802 5.28268 5.47994 5.51887 5.61552 5.72955 5.79852 5.89760 5.97756 6.08507 6.12175 6.19934 6.40567 6.45280 6.48334 6.83845 7.44989 7.77736 8.30820 8.38735 9.45876 9.89083 10.26412 11.38006 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041691 B = 0.010252 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.440951 B = 2730.445991 C = 2882.397995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.108 3.892 3 C -0.166 4.166 4 C -0.149 4.149 5 C 0.150 3.850 6 C -0.142 4.142 7 N -0.694 5.694 8 C -0.241 4.241 9 H 0.080 0.920 10 C -0.007 4.007 11 N -0.934 5.934 12 Si 0.910 3.090 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.284 1.284 16 C 0.464 3.536 17 O -0.452 6.452 18 O -0.359 6.359 19 H 0.077 0.923 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.390 0.610 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -0.795 0.314 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.071 3.929 3 C -0.223 4.223 4 C -0.187 4.187 5 C 0.055 3.945 6 C -0.202 4.202 7 N -0.338 5.338 8 C -0.371 4.371 9 H 0.098 0.902 10 C -0.203 4.203 11 N -0.581 5.581 12 Si 0.741 3.259 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.210 1.210 16 C 0.301 3.699 17 O -0.332 6.332 18 O -0.277 6.277 19 H 0.096 0.904 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.227 0.773 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.264 -1.028 -0.334 12.311 hybrid contribution 1.050 0.097 -0.058 1.056 sum -11.214 -0.930 -0.393 11.260 Atomic orbital electron populations 1.21842 0.91874 1.03074 1.02858 1.22884 0.94756 0.91984 0.83277 1.22246 1.03524 0.93977 1.02584 1.23269 0.97144 1.00461 0.97796 1.20883 0.89053 0.94888 0.89630 1.22061 1.01520 0.94706 1.01865 1.42398 0.99617 1.34719 1.57081 1.19287 0.82675 1.10878 1.24310 0.90184 1.24749 0.98050 0.97739 0.99801 1.69645 1.29077 1.21401 1.37996 0.86213 0.83675 0.77732 0.78311 1.20992 1.21672 1.21044 1.24855 0.78277 0.73637 0.93135 1.90602 1.38371 1.46360 1.57916 1.86957 1.36334 1.63464 1.40967 0.90410 0.91623 0.91564 0.90483 0.91851 0.90612 0.88486 0.89341 0.93745 0.91321 0.91596 0.77349 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.91 37.16 0.33 -1.16 16 2 C 0.11 1.61 1.24 -89.80 -0.11 1.50 16 3 C -0.17 -2.45 8.79 37.16 0.33 -2.12 16 4 C -0.15 -2.25 5.52 -25.12 -0.14 -2.39 16 5 C 0.15 3.01 1.09 -131.68 -0.14 2.87 16 6 C -0.14 -2.62 8.42 37.16 0.31 -2.31 16 7 N -0.69 -16.95 5.18 -47.10 -0.24 -17.19 16 8 C -0.24 -6.73 8.60 -15.06 -0.13 -6.86 16 9 H 0.08 2.30 6.70 -52.48 -0.35 1.95 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 12 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 13 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.46 10.35 7.17 36.51 0.26 10.61 16 17 O -0.45 -11.77 17.02 -18.41 -0.31 -12.08 16 18 O -0.36 -6.92 10.48 -38.48 -0.40 -7.32 16 19 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 25 H 0.10 1.41 7.42 -51.93 -0.39 1.03 16 26 H 0.09 1.10 7.60 -51.93 -0.39 0.70 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.42 7.16 -51.93 -0.37 1.05 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.39 9.76 7.40 -40.82 -0.30 9.45 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 261.46 15.07 3.94 3.94 Total: -1.00 -32.18 261.46 -5.02 -37.20 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.32 Total: 4.52 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.61 Total: -0.19 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.48 Total: -44.04 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.72 Total: -19.41 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.18 -5.02 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930872952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.008 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds