Wall clock time and date at job start Sun Mar 29 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.49096 * 2 1 4 4 C 1.54571 * 110.44104 * 122.48685 * 2 1 3 5 5 C 1.54496 * 102.33363 * 145.48500 * 4 2 1 6 6 C 1.52997 * 110.37034 * 225.92210 * 5 4 2 7 7 N 1.46506 * 110.36508 * 103.59819 * 5 4 2 8 8 C 1.36937 * 120.00005 * 180.02562 * 7 5 4 9 9 H 1.08007 * 119.99690 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00235 * 179.97438 * 8 7 5 11 11 N 1.31621 * 120.00012 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00263 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46827 * 60.00478 * 12 10 8 14 14 H 1.48492 * 109.47264 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47255 * 300.00346 * 12 10 8 16 16 C 1.51728 * 104.62828 * 344.87560 * 5 4 2 17 17 O 1.20832 * 125.06151 * 177.56366 * 16 5 4 18 18 O 1.34064 * 109.84954 * 357.43479 * 16 5 4 19 19 H 1.09005 * 109.46927 * 297.51390 * 1 2 3 20 20 H 1.09002 * 109.46991 * 57.50853 * 1 2 3 21 21 H 1.08991 * 109.46999 * 177.51158 * 1 2 3 22 22 H 1.09000 * 109.47249 * 182.48942 * 3 2 1 23 23 H 1.09003 * 109.47408 * 302.49094 * 3 2 1 24 24 H 1.09009 * 109.47197 * 62.48885 * 3 2 1 25 25 H 1.09002 * 110.87009 * 263.75567 * 4 2 1 26 26 H 1.09003 * 110.86587 * 27.22510 * 4 2 1 27 27 H 1.09005 * 109.46758 * 60.00100 * 6 5 4 28 28 H 1.08997 * 109.46985 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47421 * 300.00440 * 6 5 4 30 30 H 0.97000 * 120.00070 * 359.97438 * 7 5 4 31 31 H 0.96995 * 120.00238 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4332 0.0000 4 6 2.0698 -0.7779 1.2217 5 6 3.3504 -1.4321 0.6569 6 6 3.4206 -2.9049 1.0651 7 7 4.5387 -0.7147 1.1255 8 6 5.7855 -1.1303 0.7408 9 1 5.8928 -1.9872 0.0922 10 6 6.9113 -0.4503 1.1844 11 7 6.7806 0.5937 1.9752 12 14 8.6122 -1.0177 0.6602 13 1 8.7186 -0.9606 -0.8200 14 1 9.6381 -0.1302 1.2642 15 1 8.8318 -2.4129 1.1188 16 6 3.2148 -1.3024 -0.8488 17 8 4.0420 -1.6604 -1.6536 18 8 2.0393 -0.7340 -1.1527 19 1 -0.3633 0.4748 0.9115 20 1 -0.3633 0.5520 -0.8668 21 1 -0.3633 -1.0266 -0.0446 22 1 3.1545 1.4142 -0.0446 23 1 1.6757 1.9668 -0.8668 24 1 1.7481 1.9398 0.9115 25 1 2.3092 -0.0986 2.0398 26 1 1.3567 -1.5363 1.5451 27 1 2.5503 -3.4322 0.6743 28 1 4.3281 -3.3516 0.6591 29 1 3.4331 -2.9804 2.1524 30 1 4.4423 0.0551 1.7077 31 1 7.5673 1.0691 2.2849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930872952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:47 Heat of formation + Delta-G solvation = -98.150058 kcal Electronic energy + Delta-G solvation = -15139.284036 eV Core-core repulsion = 12613.163248 eV Total energy + Delta-G solvation = -2526.120788 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.20257 -38.69208 -37.11618 -34.58615 -33.77778 -30.79702 -28.41156 -27.91643 -25.84181 -24.64576 -22.30436 -20.42688 -19.13781 -17.79558 -17.65898 -16.85249 -16.27077 -15.72138 -15.39662 -15.11823 -14.50025 -14.25787 -13.67438 -13.45663 -13.33618 -13.14657 -12.95229 -12.85082 -12.68771 -12.58003 -12.43276 -12.24304 -12.04605 -11.66294 -11.40947 -11.20235 -10.73374 -9.14856 -8.01770 -5.30993 1.16240 1.42087 1.45167 1.51411 2.33064 2.51253 3.07883 3.40470 3.44931 3.69862 3.74565 3.93178 4.07996 4.36862 4.69301 4.76334 4.77212 4.83689 4.88050 4.90377 4.99419 5.08449 5.21533 5.31859 5.36554 5.54958 5.93361 6.20543 6.65146 7.28968 7.88636 8.18531 9.19666 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041691 B = 0.010252 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.440951 B = 2730.445991 C = 2882.397995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.099 3.901 3 C -0.166 4.166 4 C -0.137 4.137 5 C 0.138 3.862 6 C -0.138 4.138 7 N -0.701 5.701 8 C -0.237 4.237 9 H 0.065 0.935 10 C -0.062 4.062 11 N -0.959 5.959 12 Si 0.962 3.038 13 H -0.291 1.291 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.461 3.539 17 O -0.505 6.505 18 O -0.366 6.366 19 H 0.110 0.890 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.030 0.970 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.386 0.614 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 -0.914 1.222 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 C -0.223 4.223 4 C -0.174 4.174 5 C 0.045 3.955 6 C -0.197 4.197 7 N -0.345 5.345 8 C -0.369 4.369 9 H 0.083 0.917 10 C -0.255 4.255 11 N -0.608 5.608 12 Si 0.791 3.209 13 H -0.218 1.218 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.301 3.699 17 O -0.390 6.390 18 O -0.283 6.283 19 H 0.129 0.871 20 H 0.089 0.911 21 H 0.095 0.905 22 H 0.049 0.951 23 H 0.091 0.909 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.145 0.855 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.221 0.779 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.553 -1.158 0.583 14.611 hybrid contribution 1.612 0.147 -0.384 1.664 sum -12.941 -1.011 0.199 12.982 Atomic orbital electron populations 1.21899 0.87790 1.04384 1.04861 1.23410 0.97552 0.91124 0.81574 1.22282 1.00463 0.94785 1.04745 1.23351 0.94947 1.01297 0.97843 1.21265 0.89827 0.96018 0.88408 1.22019 1.01470 0.93452 1.02731 1.42433 1.00003 1.34939 1.57104 1.19366 0.84487 1.09970 1.23046 0.91692 1.25395 1.00972 0.98409 1.00711 1.69746 1.29423 1.22375 1.39294 0.85395 0.80421 0.77794 0.77274 1.21835 1.21210 1.20081 1.25208 0.78393 0.72616 0.93703 1.90561 1.40503 1.48634 1.59280 1.86945 1.34817 1.63153 1.43434 0.87110 0.91079 0.90508 0.95076 0.90860 0.87489 0.87550 0.85472 0.90479 0.94520 0.90117 0.77887 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.91 71.98 0.64 -1.56 16 2 C 0.10 2.66 1.24 -10.26 -0.01 2.65 16 3 C -0.17 -4.57 8.79 71.98 0.63 -3.94 16 4 C -0.14 -3.68 5.52 31.64 0.17 -3.51 16 5 C 0.14 5.41 1.09 3.69 0.00 5.41 16 6 C -0.14 -4.88 8.42 71.98 0.61 -4.27 16 7 N -0.70 -34.46 5.18 -302.93 -1.57 -36.03 16 8 C -0.24 -13.52 8.60 84.03 0.72 -12.79 16 9 H 0.07 3.86 6.70 -2.91 -0.02 3.84 16 10 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 11 N -0.96 -57.35 13.06 21.65 0.28 -57.06 16 12 Si 0.96 47.99 29.55 68.60 2.03 50.01 16 13 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 16 C 0.46 20.62 7.17 71.56 0.51 21.13 16 17 O -0.50 -27.16 17.02 21.62 0.37 -26.79 16 18 O -0.37 -13.65 10.48 -50.16 -0.53 -14.17 16 19 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 20 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.03 1.14 8.03 -2.39 -0.02 1.12 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.11 2.73 7.42 -2.39 -0.02 2.71 16 26 H 0.13 2.47 7.60 -2.39 -0.02 2.45 16 27 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.04 1.51 7.16 -2.39 -0.02 1.49 16 29 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.39 19.38 7.40 -92.71 -0.69 18.70 16 31 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -72.06 261.46 4.77 -67.29 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.44 Total: 16.77 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 3.75 Total: -0.02 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -1.29 Total: -93.09 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.16 Total: -40.97 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -72.06 4.77 -67.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930872952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.857 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds