Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 C 1.53003 * 109.47076 * 119.99665 * 2 1 3 5 5 C 1.50699 * 113.00305 * 303.01017 * 4 2 1 6 6 O 1.21300 * 119.99794 * 354.32888 * 5 4 2 7 7 N 1.34769 * 120.00123 * 174.33083 * 5 4 2 8 8 C 1.37103 * 119.99974 * 179.97438 * 7 5 4 9 9 H 1.07998 * 119.99787 * 0.02562 * 8 7 5 10 10 C 1.38952 * 120.00011 * 179.97438 * 8 7 5 11 11 N 1.31405 * 119.99763 * 359.72716 * 10 8 7 12 12 Si 1.86801 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47048 * 60.00485 * 12 10 8 14 14 H 1.48506 * 109.46684 * 180.02562 * 12 10 8 15 15 H 1.48489 * 109.47495 * 300.00096 * 12 10 8 16 16 C 1.54038 * 113.81390 * 74.83393 * 4 2 1 17 17 O 1.44567 * 85.38461 * 136.86315 * 16 4 2 18 18 C 1.44180 * 93.32398 * 335.80383 * 17 16 4 19 19 H 1.08998 * 109.47614 * 186.44973 * 1 2 3 20 20 H 1.08998 * 109.47384 * 306.44954 * 1 2 3 21 21 H 1.09001 * 109.47067 * 66.45057 * 1 2 3 22 22 H 1.08998 * 109.47040 * 239.99749 * 2 1 3 23 23 H 1.09003 * 109.46555 * 179.97438 * 3 2 1 24 24 H 1.08994 * 109.47474 * 299.99757 * 3 2 1 25 25 H 1.09003 * 109.47200 * 60.00413 * 3 2 1 26 26 H 0.97001 * 120.00518 * 359.97438 * 7 5 4 27 27 H 0.97007 * 119.99933 * 179.97438 * 11 10 8 28 28 H 1.08996 * 113.86364 * 251.07461 * 16 4 2 29 29 H 1.09004 * 113.86928 * 22.77589 * 16 4 2 30 30 H 1.08997 * 113.86031 * 270.03826 * 18 17 16 31 31 H 1.09003 * 113.86112 * 138.33751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5238 -0.1173 2.5299 6 8 0.8675 0.9024 2.4982 7 7 1.7912 -0.7101 3.7103 8 6 1.3221 -0.1603 4.8753 9 1 0.7378 0.7475 4.8471 10 6 1.5974 -0.7718 6.0923 11 7 2.3029 -1.8799 6.1261 12 14 0.9587 -0.0223 7.6797 13 1 -0.5244 0.0390 7.6365 14 1 1.3867 -0.8592 8.8294 15 1 1.5065 1.3490 7.8352 16 6 1.8997 -2.2538 1.1836 17 8 3.2322 -2.2828 1.7434 18 6 3.5601 -0.9695 1.2471 19 1 -0.3634 -1.0211 0.1154 20 1 -0.3634 0.6105 0.8266 21 1 -0.3633 0.4106 -0.9421 22 1 1.8933 -0.5139 -0.8899 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 2.3157 -1.5257 3.7357 27 1 2.4955 -2.3066 6.9757 28 1 1.1323 -2.6551 1.8454 29 1 1.8389 -2.6480 0.1692 30 1 4.0051 -0.9725 0.2521 31 1 4.1086 -0.3531 1.9595 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -60.109724 kcal Electronic energy + Delta-G solvation = -15062.981637 eV Core-core repulsion = 12538.510401 eV Total energy + Delta-G solvation = -2524.471235 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.73808 -37.36867 -34.95467 -33.49152 -31.18705 -28.52315 -27.19331 -25.64032 -24.99515 -21.92456 -20.90096 -18.42357 -17.53765 -16.38491 -15.43309 -15.42252 -14.78939 -14.13710 -13.78759 -13.69861 -13.60134 -12.60205 -12.53732 -12.06085 -11.88705 -11.49338 -11.46210 -11.12165 -10.85007 -10.64304 -10.42955 -10.22455 -10.14293 -9.81789 -9.44617 -9.35858 -8.15392 -7.94413 -6.40456 -3.81901 3.17912 3.25712 3.29763 3.68643 4.01723 4.16244 4.80613 4.82299 5.11100 5.36951 5.41030 5.51986 5.65387 5.72253 5.82348 5.99678 6.11185 6.13705 6.20760 6.40896 6.42451 6.44610 6.48323 6.50314 6.89071 7.05328 7.54771 8.06847 8.63445 9.17016 9.57885 10.08631 10.75949 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039691 B = 0.010085 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.279241 B = 2775.670954 C = 3169.839954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.132 4.132 5 C 0.458 3.542 6 O -0.585 6.585 7 N -0.549 5.549 8 C -0.305 4.305 9 H 0.103 0.897 10 C 0.025 3.975 11 N -0.892 5.892 12 Si 0.931 3.069 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.044 3.956 17 O -0.373 6.373 18 C 0.048 3.952 19 H 0.043 0.957 20 H 0.086 0.914 21 H 0.043 0.957 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.401 0.599 27 H 0.273 0.727 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 0.084 -9.512 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 C -0.209 4.209 4 C -0.136 4.136 5 C 0.243 3.757 6 O -0.472 6.472 7 N -0.185 5.185 8 C -0.435 4.435 9 H 0.121 0.879 10 C -0.178 4.178 11 N -0.532 5.532 12 Si 0.758 3.242 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.033 4.033 17 O -0.291 6.291 18 C -0.030 4.030 19 H 0.062 0.938 20 H 0.104 0.896 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.236 0.764 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.409 0.423 -9.174 9.193 hybrid contribution 0.016 -0.161 0.687 0.706 sum 0.426 0.262 -8.486 8.501 Atomic orbital electron populations 1.21920 0.94779 1.01760 1.02394 1.20797 0.96666 0.96435 0.94327 1.21934 0.99727 0.96118 1.03162 1.23809 0.96390 0.96088 0.97300 1.18911 0.86251 0.86938 0.83564 1.90415 1.44308 1.26181 1.86260 1.42001 1.46587 1.25267 1.04621 1.19694 1.31259 1.09561 0.82971 0.87901 1.25318 0.96870 0.95943 0.99669 1.69648 1.38090 1.17825 1.27633 0.85925 0.79217 0.78786 0.80317 1.19853 1.20919 1.19859 1.24127 0.86282 0.93977 0.98945 1.89775 1.29873 1.36131 1.73362 1.23991 0.95181 0.84347 0.99476 0.93758 0.89559 0.93807 0.92012 0.93874 0.93700 0.89439 0.76350 0.91699 0.88865 0.90104 0.90167 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.77 37.16 0.33 -2.12 16 2 C -0.06 -1.00 2.32 -90.62 -0.21 -1.21 16 3 C -0.15 -2.42 8.86 37.16 0.33 -2.09 16 4 C -0.13 -2.41 0.55 -154.58 -0.09 -2.50 16 5 C 0.46 10.80 6.51 -10.99 -0.07 10.73 16 6 O -0.59 -15.10 11.71 5.54 0.06 -15.04 16 7 N -0.55 -14.31 5.11 -10.96 -0.06 -14.37 16 8 C -0.31 -8.58 9.68 -14.93 -0.14 -8.73 16 9 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 10 C 0.02 0.67 5.50 -17.47 -0.10 0.58 16 11 N -0.89 -24.85 13.05 55.50 0.72 -24.13 16 12 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.04 0.74 7.67 37.64 0.29 1.03 16 17 O -0.37 -7.09 11.12 -35.23 -0.39 -7.49 16 18 C 0.05 0.80 7.74 37.64 0.29 1.09 16 19 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 20 H 0.09 1.68 5.99 -51.93 -0.31 1.37 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.83 8.12 -51.93 -0.42 0.40 16 23 H 0.04 0.62 7.75 -51.93 -0.40 0.22 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.69 5.88 -51.93 -0.31 1.38 16 26 H 0.40 10.48 6.24 -40.82 -0.25 10.23 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 29 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 31 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 LS Contribution 255.39 15.07 3.85 3.85 Total: -1.00 -29.84 255.39 -4.34 -34.19 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.14 Total: 10.09 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 0.63 Total: -3.22 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.67 Total: -38.50 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.33 Total: -22.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.84 -4.34 -34.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds