Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 C 1.53003 * 109.47076 * 119.99665 * 2 1 3 5 5 C 1.50699 * 113.00305 * 303.01017 * 4 2 1 6 6 O 1.21300 * 119.99794 * 354.32888 * 5 4 2 7 7 N 1.34769 * 120.00123 * 174.33083 * 5 4 2 8 8 C 1.37103 * 119.99974 * 179.97438 * 7 5 4 9 9 H 1.07998 * 119.99787 * 0.02562 * 8 7 5 10 10 C 1.38952 * 120.00011 * 179.97438 * 8 7 5 11 11 N 1.31405 * 119.99763 * 359.72716 * 10 8 7 12 12 Si 1.86801 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47048 * 60.00485 * 12 10 8 14 14 H 1.48506 * 109.46684 * 180.02562 * 12 10 8 15 15 H 1.48489 * 109.47495 * 300.00096 * 12 10 8 16 16 C 1.54038 * 113.81390 * 74.83393 * 4 2 1 17 17 O 1.44567 * 85.38461 * 136.86315 * 16 4 2 18 18 C 1.44180 * 93.32398 * 335.80383 * 17 16 4 19 19 H 1.08998 * 109.47614 * 186.44973 * 1 2 3 20 20 H 1.08998 * 109.47384 * 306.44954 * 1 2 3 21 21 H 1.09001 * 109.47067 * 66.45057 * 1 2 3 22 22 H 1.08998 * 109.47040 * 239.99749 * 2 1 3 23 23 H 1.09003 * 109.46555 * 179.97438 * 3 2 1 24 24 H 1.08994 * 109.47474 * 299.99757 * 3 2 1 25 25 H 1.09003 * 109.47200 * 60.00413 * 3 2 1 26 26 H 0.97001 * 120.00518 * 359.97438 * 7 5 4 27 27 H 0.97007 * 119.99933 * 179.97438 * 11 10 8 28 28 H 1.08996 * 113.86364 * 251.07461 * 16 4 2 29 29 H 1.09004 * 113.86928 * 22.77589 * 16 4 2 30 30 H 1.08997 * 113.86031 * 270.03826 * 18 17 16 31 31 H 1.09003 * 113.86112 * 138.33751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5238 -0.1173 2.5299 6 8 0.8675 0.9024 2.4982 7 7 1.7912 -0.7101 3.7103 8 6 1.3221 -0.1603 4.8753 9 1 0.7378 0.7475 4.8471 10 6 1.5974 -0.7718 6.0923 11 7 2.3029 -1.8799 6.1261 12 14 0.9587 -0.0223 7.6797 13 1 -0.5244 0.0390 7.6365 14 1 1.3867 -0.8592 8.8294 15 1 1.5065 1.3490 7.8352 16 6 1.8997 -2.2538 1.1836 17 8 3.2322 -2.2828 1.7434 18 6 3.5601 -0.9695 1.2471 19 1 -0.3634 -1.0211 0.1154 20 1 -0.3634 0.6105 0.8266 21 1 -0.3633 0.4106 -0.9421 22 1 1.8933 -0.5139 -0.8899 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 2.3157 -1.5257 3.7357 27 1 2.4955 -2.3066 6.9757 28 1 1.1323 -2.6551 1.8454 29 1 1.8389 -2.6480 0.1692 30 1 4.0051 -0.9725 0.2521 31 1 4.1086 -0.3531 1.9595 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -81.456943 kcal Electronic energy + Delta-G solvation = -15063.907322 eV Core-core repulsion = 12538.510401 eV Total energy + Delta-G solvation = -2525.396920 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21940 -39.18251 -36.57577 -35.26492 -33.22159 -30.00118 -28.47705 -27.00018 -26.93226 -23.51288 -22.32258 -20.32498 -19.39795 -17.90999 -17.00790 -16.82702 -16.53401 -15.76826 -15.58823 -15.34818 -15.19649 -14.11904 -13.91339 -13.50039 -13.39704 -13.26851 -13.04766 -12.69443 -12.44214 -12.25417 -12.14856 -11.99139 -11.49150 -11.38609 -11.13323 -10.74685 -9.99975 -9.96809 -8.46982 -5.97144 1.36707 1.38971 1.50924 1.91883 2.27640 2.65592 3.07772 3.13868 3.55740 3.76307 4.12630 4.27221 4.33801 4.42727 4.47385 4.65737 4.70708 4.89158 4.92312 5.00151 5.11636 5.15322 5.18130 5.24380 5.37688 5.56616 5.71873 6.00543 6.59536 7.10449 7.57723 8.11758 8.69827 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039691 B = 0.010085 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.279241 B = 2775.670954 C = 3169.839954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.137 4.137 5 C 0.457 3.543 6 O -0.611 6.611 7 N -0.568 5.568 8 C -0.338 4.338 9 H 0.083 0.917 10 C -0.015 4.015 11 N -0.919 5.919 12 Si 0.996 3.004 13 H -0.270 1.270 14 H -0.271 1.271 15 H -0.270 1.270 16 C 0.052 3.948 17 O -0.401 6.401 18 C 0.056 3.944 19 H 0.050 0.950 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.107 0.893 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.398 0.602 27 H 0.278 0.722 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -0.364 -11.263 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.208 4.208 4 C -0.141 4.141 5 C 0.245 3.755 6 O -0.498 6.498 7 N -0.204 5.204 8 C -0.468 4.468 9 H 0.101 0.899 10 C -0.215 4.215 11 N -0.559 5.559 12 Si 0.819 3.181 13 H -0.195 1.195 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.024 4.024 17 O -0.320 6.320 18 C -0.021 4.021 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.089 0.911 22 H 0.125 0.875 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.233 0.767 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.825 -0.022 -10.945 10.976 hybrid contribution -0.136 0.026 1.136 1.144 sum 0.689 0.004 -9.809 9.833 Atomic orbital electron populations 1.21873 0.95362 1.01460 1.02034 1.20919 0.96205 0.96395 0.94418 1.21880 1.00607 0.96149 1.02134 1.23770 0.97862 0.97368 0.95087 1.19981 0.84574 0.86151 0.84821 1.90415 1.44944 1.27330 1.87136 1.42108 1.47603 1.25615 1.05088 1.19717 1.32589 1.09758 0.84721 0.89937 1.26144 0.96716 0.96214 1.02404 1.69729 1.38836 1.18735 1.28623 0.84960 0.78636 0.78120 0.76429 1.19485 1.19511 1.19524 1.24283 0.84998 0.92330 1.00816 1.89760 1.30816 1.36980 1.74427 1.24157 0.93672 0.83002 1.01271 0.93107 0.93888 0.91077 0.87456 0.92467 0.91314 0.93827 0.76660 0.91290 0.90805 0.85290 0.85347 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 8.77 71.98 0.63 -3.91 16 2 C -0.06 -1.73 2.32 -10.79 -0.03 -1.75 16 3 C -0.15 -4.45 8.86 71.98 0.64 -3.81 16 4 C -0.14 -4.79 0.55 -52.23 -0.03 -4.82 16 5 C 0.46 22.07 6.51 87.66 0.57 22.64 16 6 O -0.61 -32.78 11.71 -3.09 -0.04 -32.82 16 7 N -0.57 -30.63 5.11 -306.98 -1.57 -32.20 16 8 C -0.34 -19.77 9.68 84.04 0.81 -18.96 16 9 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 10 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 11 N -0.92 -52.04 13.05 21.66 0.28 -51.76 16 12 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 C 0.05 1.64 7.67 72.30 0.55 2.20 16 17 O -0.40 -14.57 11.12 -148.98 -1.66 -16.23 16 18 C 0.06 1.74 7.74 72.29 0.56 2.30 16 19 H 0.05 1.44 7.82 -2.39 -0.02 1.42 16 20 H 0.04 1.68 5.99 -2.39 -0.01 1.66 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 22 H 0.11 2.19 8.12 -2.39 -0.02 2.18 16 23 H 0.06 1.50 7.75 -2.39 -0.02 1.48 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.68 5.88 -2.39 -0.01 1.67 16 26 H 0.40 21.52 6.24 -92.71 -0.58 20.94 16 27 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 28 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 29 H 0.13 2.83 8.09 -2.39 -0.02 2.81 16 30 H 0.13 2.81 8.10 -2.39 -0.02 2.79 16 31 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 Total: -1.00 -67.47 255.39 3.78 -63.70 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.55 Total: 29.84 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.18 Total: -6.46 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.29 Total: -83.96 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.69 Total: -49.04 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.47 3.78 -63.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.762 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds