Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 N 1.46493 * 114.20509 * 272.47413 * 11 10 9 13 13 C 1.34778 * 120.00335 * 248.60215 * 12 11 10 14 14 O 1.21344 * 119.99791 * 359.97438 * 13 12 11 15 15 C 1.49453 * 120.00177 * 180.02562 * 13 12 11 16 16 N 1.34771 * 119.99857 * 179.97438 * 15 13 12 17 17 O 1.21353 * 119.99914 * 359.97438 * 15 13 12 18 18 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 19 19 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 20 20 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 21 21 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 22 22 H 1.09005 * 114.38333 * 139.66162 * 11 10 9 23 23 H 0.97005 * 119.99978 * 68.60030 * 12 11 10 24 24 H 0.96993 * 120.00407 * 359.97438 * 16 15 13 25 25 H 0.97000 * 119.99913 * 180.02562 * 16 15 13 26 26 H 1.09000 * 113.47406 * 321.64878 * 18 9 7 27 27 H 1.09005 * 113.46688 * 92.02731 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 7 0.8717 -3.9777 -2.4705 13 6 0.1558 -4.6441 -3.3978 14 8 -0.7887 -5.3268 -3.0598 15 6 0.5259 -4.5430 -4.8423 16 7 -0.1897 -5.2097 -5.7695 17 8 1.4708 -3.8605 -5.1802 18 6 1.6714 -3.8129 -0.0873 19 1 -0.4849 0.8400 0.0004 20 1 -0.6583 -2.9391 0.4349 21 1 -0.5359 -2.1366 -1.1891 22 1 -0.0731 -4.9685 -0.8204 23 1 1.6270 -3.4322 -2.7406 24 1 -0.9446 -5.7555 -5.4994 25 1 0.0508 -5.1444 -6.7069 26 1 2.6488 -4.0489 -0.5082 27 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030881897.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = -11.001775 kcal Electronic energy + Delta-G solvation = -14058.328495 eV Core-core repulsion = 11432.446397 eV Total energy + Delta-G solvation = -2625.882098 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.35813 -38.66324 -37.49351 -34.06900 -33.06021 -31.85529 -27.79737 -25.19081 -24.69514 -22.88762 -20.35724 -19.44516 -18.44706 -16.99404 -16.75634 -15.99087 -15.53852 -15.03206 -14.83124 -13.86286 -13.81569 -13.50823 -12.94389 -12.64250 -11.68282 -11.53675 -11.36461 -10.86228 -10.63470 -10.31916 -9.94549 -9.89858 -9.51788 -9.46285 -8.84292 -8.55062 -6.96317 -5.82310 -3.14691 1.60212 2.72162 3.38683 3.41624 3.43465 3.45557 4.10610 4.42899 4.76861 5.12475 5.39863 5.45657 6.02044 6.13295 6.30607 6.43220 6.48242 6.65357 6.92890 7.11890 7.19149 7.47315 7.68313 7.91942 7.99175 8.28362 8.98575 9.65698 10.57065 11.35991 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.038300 B = 0.008177 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.886969 B = 3423.538888 C = 3766.212087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.083 0.917 9 N -0.608 5.608 10 C 0.151 3.849 11 C 0.077 3.923 12 N -0.655 5.655 13 C 0.504 3.496 14 O -0.535 6.535 15 C 0.514 3.486 16 N -0.827 5.827 17 O -0.520 6.520 18 C 0.109 3.891 19 H 0.255 0.745 20 H 0.044 0.956 21 H 0.064 0.936 22 H 0.103 0.897 23 H 0.417 0.583 24 H 0.413 0.587 25 H 0.407 0.593 26 H 0.046 0.954 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -10.233 -7.679 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.101 0.899 9 N -0.335 5.335 10 C 0.024 3.976 11 C -0.029 4.029 12 N -0.305 5.305 13 C 0.283 3.717 14 O -0.413 6.413 15 C 0.293 3.707 16 N -0.393 5.393 17 O -0.395 6.395 18 C -0.018 4.018 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.082 0.918 22 H 0.120 0.880 23 H 0.254 0.746 24 H 0.243 0.757 25 H 0.239 0.761 26 H 0.065 0.935 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.348 -9.839 -7.406 12.320 hybrid contribution 0.415 1.025 -0.227 1.129 sum 0.066 -8.814 -7.632 11.659 Atomic orbital electron populations 1.69857 1.05110 1.25563 1.55801 1.24845 0.95638 0.97743 1.01934 0.86089 0.78630 0.83335 0.77617 1.21441 1.21713 1.20507 1.18955 0.90550 0.81498 1.44143 0.89926 1.45838 1.06094 0.99225 1.82319 1.22428 0.88904 0.89498 0.96782 1.22823 0.99907 1.00882 0.79255 1.45321 1.32376 1.46531 1.06289 1.19902 0.83764 0.81383 0.86609 1.90721 1.28129 1.40684 1.81738 1.20306 0.82780 0.79821 0.87816 1.43505 1.34923 1.50961 1.09937 1.90827 1.27822 1.38679 1.82149 1.22774 0.95814 0.87456 0.95772 0.93549 0.93883 0.91765 0.87959 0.74565 0.75695 0.76085 0.93538 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 11.86 55.49 0.66 -26.67 15 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 15 3 Si 0.91 22.14 29.56 -169.99 -5.02 17.12 15 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 7 C -0.22 -6.20 10.73 -15.06 -0.16 -6.36 15 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 15 9 N -0.61 -15.21 3.76 -184.80 -0.70 -15.90 15 10 C 0.15 3.52 7.02 -8.51 -0.06 3.46 15 11 C 0.08 1.45 4.61 -67.82 -0.31 1.14 15 12 N -0.65 -11.79 5.38 -54.05 -0.29 -12.08 15 13 C 0.50 8.42 7.89 -11.58 -0.09 8.33 15 14 O -0.53 -9.50 16.07 5.50 0.09 -9.42 15 15 C 0.51 7.56 8.16 -11.59 -0.09 7.46 15 16 N -0.83 -8.21 8.87 30.90 0.27 -7.93 15 17 O -0.52 -9.13 17.31 5.49 0.10 -9.03 15 18 C 0.11 2.13 8.45 -8.52 -0.07 2.06 15 19 H 0.25 7.36 8.31 -40.82 -0.34 7.02 15 20 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.06 1.68 7.63 -51.93 -0.40 1.28 15 22 H 0.10 1.78 7.45 -51.93 -0.39 1.39 15 23 H 0.42 7.78 8.23 -40.82 -0.34 7.44 15 24 H 0.41 3.46 8.30 -40.82 -0.34 3.12 15 25 H 0.41 3.05 8.93 -40.82 -0.36 2.69 15 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 247.61 15.07 3.73 3.73 Total: -1.00 -32.85 247.61 -4.69 -37.53 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -2.64 Total: 6.79 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -0.89 Total: 15.87 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.05 Total: -62.59 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.85 -4.69 -37.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030881897.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.533 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds