Wall clock time and date at job start Sun Mar 29 2020 21:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 N 1.46493 * 114.20509 * 272.47413 * 11 10 9 13 13 C 1.34778 * 120.00335 * 248.60215 * 12 11 10 14 14 O 1.21344 * 119.99791 * 359.97438 * 13 12 11 15 15 C 1.49453 * 120.00177 * 180.02562 * 13 12 11 16 16 N 1.34771 * 119.99857 * 179.97438 * 15 13 12 17 17 O 1.21353 * 119.99914 * 359.97438 * 15 13 12 18 18 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 19 19 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 20 20 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 21 21 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 22 22 H 1.09005 * 114.38333 * 139.66162 * 11 10 9 23 23 H 0.97005 * 119.99978 * 68.60030 * 12 11 10 24 24 H 0.96993 * 120.00407 * 359.97438 * 16 15 13 25 25 H 0.97000 * 119.99913 * 180.02562 * 16 15 13 26 26 H 1.09000 * 113.47406 * 321.64878 * 18 9 7 27 27 H 1.09005 * 113.46688 * 92.02731 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 7 0.8717 -3.9777 -2.4705 13 6 0.1558 -4.6441 -3.3978 14 8 -0.7887 -5.3268 -3.0598 15 6 0.5259 -4.5430 -4.8423 16 7 -0.1897 -5.2097 -5.7695 17 8 1.4708 -3.8605 -5.1802 18 6 1.6714 -3.8129 -0.0873 19 1 -0.4849 0.8400 0.0004 20 1 -0.6583 -2.9391 0.4349 21 1 -0.5359 -2.1366 -1.1891 22 1 -0.0731 -4.9685 -0.8204 23 1 1.6270 -3.4322 -2.7406 24 1 -0.9446 -5.7555 -5.4994 25 1 0.0508 -5.1444 -6.7069 26 1 2.6488 -4.0489 -0.5082 27 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030881897.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:30 Heat of formation + Delta-G solvation = -39.511678 kcal Electronic energy + Delta-G solvation = -14059.564777 eV Core-core repulsion = 11432.446397 eV Total energy + Delta-G solvation = -2627.118381 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.69110 -40.14450 -38.96951 -35.37698 -34.51420 -33.69699 -29.70633 -26.65299 -26.42328 -24.65623 -21.67910 -21.06651 -19.65187 -18.78362 -18.08532 -17.30277 -16.96575 -16.75093 -16.36811 -15.67555 -15.22173 -14.92308 -14.60221 -14.44811 -13.39143 -13.25871 -12.86019 -12.79607 -12.42354 -12.16548 -11.79398 -11.32836 -10.97145 -10.90042 -10.76771 -10.09061 -8.97197 -7.94121 -5.26387 0.34275 1.45986 1.47271 1.49089 1.56438 2.14516 2.46674 2.89433 3.29590 3.41584 3.61658 3.74765 4.43741 4.49885 4.79019 4.85354 5.01180 5.18840 5.42623 5.47977 5.62639 5.87421 5.96757 6.36692 6.81509 6.87957 7.04235 7.58195 8.56751 9.24687 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.038300 B = 0.008177 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.886969 B = 3423.538888 C = 3766.212087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.228 4.228 8 H 0.090 0.910 9 N -0.637 5.637 10 C 0.146 3.854 11 C 0.105 3.895 12 N -0.662 5.662 13 C 0.505 3.495 14 O -0.543 6.543 15 C 0.518 3.482 16 N -0.796 5.796 17 O -0.553 6.553 18 C 0.115 3.885 19 H 0.248 0.752 20 H 0.036 0.964 21 H 0.026 0.974 22 H 0.126 0.874 23 H 0.414 0.586 24 H 0.424 0.576 25 H 0.424 0.576 26 H 0.064 0.936 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -11.455 -8.343 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.356 4.356 8 H 0.108 0.892 9 N -0.363 5.363 10 C 0.019 3.981 11 C -0.001 4.001 12 N -0.312 5.312 13 C 0.286 3.714 14 O -0.421 6.421 15 C 0.296 3.704 16 N -0.363 5.363 17 O -0.430 6.430 18 C -0.011 4.011 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.045 0.955 22 H 0.143 0.857 23 H 0.250 0.750 24 H 0.256 0.744 25 H 0.258 0.742 26 H 0.082 0.918 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.362 -11.134 -8.103 13.776 hybrid contribution 0.145 1.287 -0.056 1.296 sum 0.507 -9.847 -8.159 12.798 Atomic orbital electron populations 1.70035 1.06636 1.25684 1.57948 1.25660 0.96425 1.01052 1.02775 0.85063 0.77955 0.79147 0.77188 1.21643 1.22343 1.18820 1.19370 0.91216 0.82812 1.42199 0.89225 1.46111 1.06947 1.00762 1.82526 1.22421 0.88371 0.91306 0.96018 1.22517 0.98911 0.98983 0.79706 1.45344 1.32630 1.47048 1.06207 1.20263 0.83112 0.80567 0.87444 1.90716 1.28331 1.40922 1.82175 1.19936 0.82908 0.80228 0.87302 1.43314 1.33906 1.49011 1.10069 1.90828 1.29436 1.40526 1.82229 1.22919 0.96968 0.84197 0.96988 0.94342 0.94677 0.95547 0.85680 0.74953 0.74375 0.74160 0.91773 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.30 11.86 21.65 0.26 -58.05 15 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 15 3 Si 0.98 45.92 29.56 68.60 2.03 47.94 15 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 15 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 15 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 15 7 C -0.23 -12.56 10.73 84.04 0.90 -11.66 15 8 H 0.09 4.68 7.84 -2.91 -0.02 4.65 15 9 N -0.64 -31.63 3.76 -738.58 -2.78 -34.41 15 10 C 0.15 6.87 7.02 83.18 0.58 7.46 15 11 C 0.11 3.80 4.61 45.47 0.21 4.01 15 12 N -0.66 -23.10 5.38 -443.28 -2.39 -25.48 15 13 C 0.51 16.08 7.89 87.27 0.69 16.77 15 14 O -0.54 -18.17 16.07 -3.23 -0.05 -18.22 15 15 C 0.52 14.30 8.16 87.27 0.71 15.02 15 16 N -0.80 -13.66 8.87 -174.50 -1.55 -15.21 15 17 O -0.55 -18.73 17.31 -3.26 -0.06 -18.79 15 18 C 0.11 4.27 8.45 83.18 0.70 4.98 15 19 H 0.25 14.77 8.31 -92.71 -0.77 14.00 15 20 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.03 1.42 7.63 -2.39 -0.02 1.40 15 22 H 0.13 4.03 7.45 -2.38 -0.02 4.01 15 23 H 0.41 15.15 8.23 -92.70 -0.76 14.38 15 24 H 0.42 5.84 8.30 -92.71 -0.77 5.07 15 25 H 0.42 5.09 8.93 -92.71 -0.83 4.27 15 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 27 H 0.07 2.38 8.14 -2.38 -0.02 2.36 15 Total: -1.00 -70.59 247.61 -1.40 -71.99 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -1.13 Total: 16.95 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 4.27 Total: 33.28 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -6.46 Total: -133.15 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.11 Total: -37.01 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -70.59 -1.40 -71.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030881897.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.477 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds