Wall clock time and date at job start Sun Mar 29 2020 21:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 N 1.29415 * 125.70040 * 90.02534 * 14 13 12 16 16 N 1.26400 * 116.47742 * 179.97438 * 15 14 13 17 17 C 1.29417 * 116.47512 * 0.02562 * 16 15 14 18 18 S 1.71220 * 108.60770 * 359.77014 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 22 22 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 23 23 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 24 24 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 25 25 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 26 26 H 1.07997 * 125.69752 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 7 1.8532 -1.1478 -4.4184 16 7 2.4615 -1.7148 -5.3703 17 6 3.7511 -1.6068 -5.3766 18 16 4.2280 -0.6750 -4.0216 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.9033 -0.5281 4.4375 23 1 1.4496 -1.4978 -1.4101 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0463 -2.1182 26 1 4.4153 -2.0299 -6.1157 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119879986.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:01 Heat of formation + Delta-G solvation = 73.314143 kcal Electronic energy + Delta-G solvation = -11803.094256 eV Core-core repulsion = 9623.621241 eV Total energy + Delta-G solvation = -2179.473015 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.16008 -36.62840 -33.12191 -31.62622 -29.57320 -26.97817 -25.17433 -24.03973 -20.53406 -20.30889 -19.09776 -16.91053 -15.95276 -15.61253 -14.95658 -14.70371 -13.87794 -13.33089 -13.03570 -12.77811 -12.39639 -12.08086 -11.68291 -11.09787 -10.67528 -10.34823 -10.22871 -10.18092 -9.93002 -9.68814 -9.48830 -9.25243 -8.61982 -7.67017 -6.09192 -4.07712 0.50189 1.02513 1.48010 2.62644 3.22948 3.31318 3.35417 4.11787 4.35829 4.69861 5.05029 5.08175 5.20990 5.41429 5.70177 5.79571 6.13990 6.22585 6.41977 6.62392 7.01948 7.56858 7.73924 8.08328 8.59410 8.60697 9.01454 9.52136 11.04124 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.062141 B = 0.007086 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.480253 B = 3950.634459 C = 4126.772331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.185 3.815 3 H 0.038 0.962 4 C -0.501 4.501 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.665 5.665 13 C 0.130 3.870 14 C 0.008 3.992 15 N -0.270 5.270 16 N -0.262 5.262 17 C -0.068 4.068 18 S 0.196 5.804 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.028 0.972 22 H 0.264 0.736 23 H 0.339 0.661 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 2.983 -14.212 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.076 3.924 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.297 5.297 13 C -0.003 4.003 14 C -0.271 4.271 15 N -0.109 5.109 16 N -0.098 5.098 17 C -0.367 4.367 18 S 0.438 5.562 19 H 0.066 0.934 20 H 0.075 0.925 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.157 0.843 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.783 2.943 -14.013 14.810 hybrid contribution -1.604 0.734 -0.075 1.765 sum 2.179 3.677 -14.087 14.721 Atomic orbital electron populations 1.22872 1.01090 1.01271 0.99126 1.19690 0.88908 0.95190 0.88614 0.94450 1.20911 1.31543 1.13935 0.87548 0.89946 1.24928 0.95902 0.96646 0.95805 1.69878 1.45683 1.40250 0.97883 0.86890 0.80642 0.83817 0.76963 1.20693 1.22361 1.19424 1.60781 1.58629 1.08588 1.01654 1.20514 1.00261 0.94269 0.85252 1.29468 0.93713 1.01814 1.02061 1.71468 1.30503 1.08959 1.00017 1.71413 1.05360 1.16374 1.16675 1.30394 0.96956 1.05169 1.04160 1.83823 1.09757 1.44777 1.17892 0.93400 0.92480 0.95249 0.92582 0.84291 0.92303 0.88776 0.77358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.87 8.64 37.16 0.32 -3.55 15 2 C 0.18 4.16 2.16 -68.86 -0.15 4.01 15 3 H 0.04 0.85 6.86 -51.93 -0.36 0.50 15 4 C -0.50 -13.74 9.42 -34.44 -0.32 -14.07 15 5 H 0.08 2.50 8.06 -52.49 -0.42 2.08 15 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 15 7 N -0.90 -27.09 13.96 55.43 0.77 -26.32 15 8 Si 0.89 21.35 24.37 -169.99 -4.14 17.20 15 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 15 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 15 11 H -0.27 -6.12 6.53 56.52 0.37 -5.75 15 12 N -0.66 -13.04 6.22 -109.22 -0.68 -13.72 15 13 C 0.13 2.09 6.08 -4.98 -0.03 2.06 15 14 C 0.01 0.13 7.04 -13.30 -0.09 0.04 15 15 N -0.27 -4.54 11.66 32.58 0.38 -4.16 15 16 N -0.26 -4.03 11.66 29.45 0.34 -3.69 15 17 C -0.07 -0.77 12.39 51.75 0.64 -0.13 15 18 S 0.20 2.30 23.06 -107.50 -2.48 -0.18 15 19 H 0.05 1.05 3.27 -51.93 -0.17 0.88 15 20 H 0.06 1.18 8.13 -51.93 -0.42 0.76 15 21 H 0.03 0.53 7.45 -51.93 -0.39 0.14 15 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 23 H 0.34 6.64 8.46 -39.29 -0.33 6.30 15 24 H 0.06 0.92 7.44 -51.93 -0.39 0.54 15 25 H 0.09 1.38 8.06 -51.93 -0.42 0.96 15 26 H 0.21 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 236.72 15.07 3.57 3.57 Total: -1.00 -31.07 236.72 -4.47 -35.54 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -2.50 Total: 1.57 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.27 Total: -9.80 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.82 Total: -47.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.20 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.48 Total: -0.18 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.07 -4.47 -35.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879986.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.852 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds