Wall clock time and date at job start Sun Mar 29 2020 21:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 N 1.29415 * 125.70040 * 90.02534 * 14 13 12 16 16 N 1.26400 * 116.47742 * 179.97438 * 15 14 13 17 17 C 1.29417 * 116.47512 * 0.02562 * 16 15 14 18 18 S 1.71220 * 108.60770 * 359.77014 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 22 22 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 23 23 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 24 24 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 25 25 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 26 26 H 1.07997 * 125.69752 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 7 1.8532 -1.1478 -4.4184 16 7 2.4615 -1.7148 -5.3703 17 6 3.7511 -1.6068 -5.3766 18 16 4.2280 -0.6750 -4.0216 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.9033 -0.5281 4.4375 23 1 1.4496 -1.4978 -1.4101 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0463 -2.1182 26 1 4.4153 -2.0299 -6.1157 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119879986.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:01 Heat of formation + Delta-G solvation = 48.146863 kcal Electronic energy + Delta-G solvation = -11804.185591 eV Core-core repulsion = 9623.621241 eV Total energy + Delta-G solvation = -2180.564350 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.23815 -38.21824 -34.87325 -33.23395 -31.00700 -28.21097 -27.12060 -25.32296 -22.19590 -21.51599 -20.18124 -18.83390 -17.29829 -16.87109 -16.53290 -16.14254 -15.47634 -14.76560 -14.44905 -14.27254 -13.95588 -13.69130 -13.21745 -12.85476 -12.50819 -12.00441 -11.50707 -11.42087 -11.28261 -11.22497 -10.95542 -10.73720 -10.61154 -9.21826 -8.25292 -6.28674 -0.50057 0.05715 0.47768 1.34004 1.38334 1.48860 1.54807 2.34415 3.02323 3.09009 3.54178 3.88488 3.94150 4.40550 4.46405 4.49524 4.56420 4.67194 4.68251 4.95606 5.35529 5.64890 5.91314 6.49804 6.60035 6.78668 7.35963 7.54918 8.91976 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.062141 B = 0.007086 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.480253 B = 3950.634459 C = 4126.772331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.189 3.811 3 H 0.044 0.956 4 C -0.505 4.505 5 H 0.035 0.965 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.300 1.300 11 H -0.242 1.242 12 N -0.676 5.676 13 C 0.134 3.866 14 C -0.022 4.022 15 N -0.298 5.298 16 N -0.301 5.301 17 C -0.050 4.050 18 S 0.250 5.750 19 H 0.040 0.960 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.265 0.735 23 H 0.337 0.663 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 4.406 -16.010 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.080 3.920 3 H 0.062 0.938 4 C -0.543 4.543 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.228 1.228 11 H -0.165 1.165 12 N -0.307 5.307 13 C 0.002 3.998 14 C -0.302 4.302 15 N -0.137 5.137 16 N -0.137 5.137 17 C -0.348 4.348 18 S 0.492 5.508 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.154 0.846 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.828 4.369 -15.851 16.882 hybrid contribution -1.444 0.179 0.386 1.505 sum 2.384 4.548 -15.466 16.296 Atomic orbital electron populations 1.22754 0.99449 1.01433 1.00270 1.19463 0.90032 0.94719 0.87791 0.93782 1.21202 1.30464 1.12640 0.90041 0.94628 1.25807 0.97481 1.00139 0.95294 1.70047 1.47923 1.42610 0.98590 0.85816 0.78786 0.79953 0.77550 1.19725 1.22801 1.16534 1.60581 1.58523 1.09206 1.02390 1.20484 1.01210 0.93879 0.84242 1.29298 0.95896 1.02846 1.02112 1.71426 1.32097 1.09500 1.00691 1.71378 1.07137 1.18010 1.17223 1.31111 0.96309 1.03123 1.04263 1.83631 1.06651 1.43632 1.16928 0.94182 0.92998 0.91938 0.92589 0.84576 0.91751 0.87387 0.73077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.14 8.64 71.98 0.62 -6.52 15 2 C 0.19 8.29 2.16 44.17 0.10 8.39 15 3 H 0.04 1.89 6.86 -2.39 -0.02 1.88 15 4 C -0.50 -28.16 9.42 25.60 0.24 -27.92 15 5 H 0.04 2.25 8.06 -2.91 -0.02 2.23 15 6 C 0.01 0.55 5.45 84.65 0.46 1.01 15 7 N -0.95 -58.95 13.96 21.45 0.30 -58.65 15 8 Si 0.95 43.40 24.37 68.60 1.67 45.08 15 9 H -0.27 -11.90 6.87 99.48 0.68 -11.21 15 10 H -0.30 -13.78 7.11 99.48 0.71 -13.08 15 11 H -0.24 -9.88 6.53 99.48 0.65 -9.23 15 12 N -0.68 -25.93 6.22 -499.47 -3.11 -29.04 15 13 C 0.13 4.06 6.08 85.56 0.52 4.58 15 14 C -0.02 -0.64 7.04 88.46 0.62 -0.02 15 15 N -0.30 -9.64 11.66 -50.84 -0.59 -10.23 15 16 N -0.30 -8.76 11.66 -60.75 -0.71 -9.47 15 17 C -0.05 -0.98 12.39 130.60 1.62 0.64 15 18 S 0.25 5.18 23.06 -56.49 -1.30 3.88 15 19 H 0.04 1.64 3.27 -2.39 -0.01 1.63 15 20 H 0.05 2.07 8.13 -2.39 -0.02 2.05 15 21 H 0.06 2.05 7.45 -2.38 -0.02 2.04 15 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 23 H 0.34 13.10 8.46 -89.69 -0.76 12.34 15 24 H 0.06 1.86 7.44 -2.38 -0.02 1.85 15 25 H 0.11 2.90 8.06 -2.39 -0.02 2.88 15 26 H 0.25 2.39 8.06 -2.91 -0.02 2.37 15 Total: -1.00 -68.70 236.72 0.81 -67.89 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.36 Total: 10.39 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.18 Total: -19.84 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.11 Total: -107.40 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.08 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.30 Total: 3.88 kcal Total: -68.70 0.81 -67.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879986.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.040 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds