Wall clock time and date at job start Sun Mar 29 2020 21:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99898 * 2 1 3 5 5 H 1.07995 * 120.00106 * 245.63474 * 4 2 1 6 6 C 1.37877 * 119.99879 * 65.63190 * 4 2 1 7 7 N 1.31510 * 119.99900 * 197.16879 * 6 4 2 8 8 Si 1.86801 * 119.99902 * 17.43785 * 6 4 2 9 9 H 1.48502 * 109.47020 * 179.72366 * 8 6 4 10 10 H 1.48504 * 109.47454 * 299.72532 * 8 6 4 11 11 H 1.48503 * 109.46823 * 59.72952 * 8 6 4 12 12 N 1.46903 * 109.46997 * 120.00324 * 2 1 3 13 13 C 1.46901 * 110.99948 * 274.99688 * 12 2 1 14 14 C 1.50696 * 109.47487 * 179.97438 * 13 12 2 15 15 N 1.29415 * 125.69515 * 90.02193 * 14 13 12 16 16 N 1.26402 * 116.47634 * 179.97438 * 15 14 13 17 17 C 1.29421 * 116.47236 * 0.02562 * 16 15 14 18 18 S 1.71219 * 108.60801 * 359.77209 * 17 16 15 19 19 H 1.09000 * 109.46859 * 306.33938 * 1 2 3 20 20 H 1.08999 * 109.46843 * 66.33377 * 1 2 3 21 21 H 1.08994 * 109.47090 * 186.33935 * 1 2 3 22 22 H 0.97000 * 119.99990 * 355.18262 * 7 6 4 23 23 H 1.00902 * 110.99920 * 38.94678 * 12 2 1 24 24 H 1.08998 * 109.47327 * 300.00050 * 13 12 2 25 25 H 1.09003 * 109.47160 * 59.99949 * 13 12 2 26 26 H 1.07999 * 125.69462 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5761 -1.6385 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9228 -0.9277 -3.5509 8 14 1.3093 1.6194 -2.6500 9 1 1.1225 1.9472 -4.0863 10 1 0.0393 1.8586 -1.9184 11 1 2.3780 2.4793 -2.0810 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5560 15 7 3.8276 -0.6411 3.9060 16 7 4.0553 -1.3059 4.9566 17 6 3.0228 -1.7940 5.5656 18 16 1.6154 -1.3460 4.6996 19 1 -0.3633 0.6090 0.8278 20 1 -0.3633 0.4125 -0.9412 21 1 -0.3633 -1.0213 0.1135 22 1 2.2474 -1.8381 -3.4692 23 1 1.4495 -1.4980 1.4100 24 1 2.7590 1.0460 2.1183 25 1 1.0871 0.6163 2.5526 26 1 3.0451 -2.3819 6.4713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119879988.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:04 Heat of formation + Delta-G solvation = 67.191254 kcal Electronic energy + Delta-G solvation = -11797.448790 eV Core-core repulsion = 9617.710267 eV Total energy + Delta-G solvation = -2179.738523 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.18984 -36.60691 -33.14878 -31.63304 -29.46475 -26.94385 -24.89634 -23.89472 -20.66938 -20.05078 -19.10906 -17.56354 -16.08351 -15.70369 -14.58609 -14.28034 -14.03743 -13.58646 -13.20036 -12.50303 -12.19706 -11.99133 -11.45209 -11.29810 -10.54358 -10.43816 -10.21430 -10.04358 -9.94819 -9.80030 -9.67074 -9.02404 -8.23151 -7.65899 -6.44374 -4.03434 0.45370 0.93004 1.35564 2.62774 3.33855 3.42018 3.57872 4.08746 4.47284 4.68033 4.94519 5.13077 5.25564 5.39179 5.65096 5.83137 6.16782 6.29852 6.48503 6.71182 7.08988 7.60211 8.06901 8.18731 8.44705 8.59586 9.00343 9.64320 10.95834 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060706 B = 0.007027 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.126148 B = 3983.451121 C = 4062.770850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.189 3.811 3 H 0.031 0.969 4 C -0.584 4.584 5 H 0.063 0.937 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 1.045 2.955 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.282 1.282 12 N -0.663 5.663 13 C 0.130 3.870 14 C 0.016 3.984 15 N -0.251 5.251 16 N -0.259 5.259 17 C -0.056 4.056 18 S 0.152 5.848 19 H 0.020 0.980 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.268 0.732 23 H 0.331 0.669 24 H 0.103 0.897 25 H 0.049 0.951 26 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 1.127 16.569 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.081 3.919 3 H 0.049 0.951 4 C -0.622 4.622 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.294 5.294 13 C -0.003 4.003 14 C -0.263 4.263 15 N -0.089 5.089 16 N -0.095 5.095 17 C -0.356 4.356 18 S 0.393 5.607 19 H 0.039 0.961 20 H 0.083 0.917 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.148 0.852 24 H 0.121 0.879 25 H 0.067 0.933 26 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.903 2.413 15.272 15.946 hybrid contribution -0.391 -1.277 1.488 2.000 sum -4.295 1.136 16.760 17.339 Atomic orbital electron populations 1.22934 1.00794 1.00116 1.00454 1.19586 0.89220 0.94767 0.88343 0.95106 1.21924 1.39795 1.10439 0.90050 0.91866 1.25706 0.95035 1.04943 0.92035 1.70848 1.42017 1.10007 1.31313 0.84052 0.76853 0.75562 0.76184 1.21054 1.20312 1.20876 1.60801 1.58495 1.08332 1.01805 1.20572 0.99179 0.95049 0.85496 1.29562 0.92129 1.02097 1.02556 1.71441 1.16268 1.13711 1.07481 1.71463 1.27771 1.07729 1.02546 1.30379 0.91618 1.06531 1.07024 1.83717 1.13198 1.45678 1.18106 0.96057 0.91721 0.93485 0.92185 0.85225 0.87860 0.93278 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.85 37.16 0.33 -3.42 15 2 C 0.19 4.33 2.16 -68.86 -0.15 4.18 15 3 H 0.03 0.71 6.45 -51.93 -0.34 0.38 15 4 C -0.58 -16.28 9.10 -34.44 -0.31 -16.59 15 5 H 0.06 1.95 8.06 -52.49 -0.42 1.53 15 6 C 0.03 0.79 5.29 -17.82 -0.09 0.70 15 7 N -0.91 -27.76 13.70 55.43 0.76 -27.00 15 8 Si 1.04 24.61 26.29 -169.99 -4.47 20.14 15 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 10 H -0.28 -5.90 5.76 56.52 0.33 -5.58 15 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 12 N -0.66 -13.41 6.22 -109.22 -0.68 -14.09 15 13 C 0.13 2.14 6.08 -4.98 -0.03 2.11 15 14 C 0.02 0.25 7.04 -13.30 -0.09 0.16 15 15 N -0.25 -4.49 11.66 32.58 0.38 -4.11 15 16 N -0.26 -4.13 11.66 29.45 0.34 -3.78 15 17 C -0.06 -0.64 12.39 51.75 0.64 0.00 15 18 S 0.15 1.70 23.06 -107.50 -2.48 -0.78 15 19 H 0.02 0.36 7.62 -51.93 -0.40 -0.04 15 20 H 0.06 1.40 4.88 -51.93 -0.25 1.15 15 21 H 0.05 0.93 8.01 -51.93 -0.42 0.51 15 22 H 0.27 8.22 8.73 -40.82 -0.36 7.86 15 23 H 0.33 6.27 8.38 -39.29 -0.33 5.94 15 24 H 0.10 1.75 8.06 -51.93 -0.42 1.33 15 25 H 0.05 0.69 7.56 -51.93 -0.39 0.30 15 26 H 0.21 1.43 8.06 -52.49 -0.42 1.01 15 LS Contribution 239.29 15.07 3.61 3.61 Total: -1.00 -32.00 239.29 -4.86 -36.86 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.61 Total: 2.01 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 0.29 Total: -12.87 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.80 Total: -48.97 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.47 Total: 20.14 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.48 Total: -0.78 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.00 -4.86 -36.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119879988.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.052 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds